PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Phvul.002G064100.1
Common NamePHAVU_002G064100g
Organism
Phaseolus vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
Family TALE
Protein Properties Length: 312aa    MW: 35175.7 Da    PI: 4.9563
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Phvul.002G064100.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox28.91.9e-092542882155
                         HSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHH CS
            Homeobox  21 knrypsaeereeLAkklgLterqVkvWFqNrRake 55 
                         k +yp+++++ eLAk++gL+++q+ +WF N+R ++
  Phvul.002G064100.1 254 KWPYPTEADKIELAKSTGLDQKQINNWFINQRKRH 288
                         569*****************************885 PP
2ELK34.93.4e-12208229122
                 ELK   1 ELKhqLlrKYsgyLgsLkqEFs 22 
                         ELK++LlrKY++++g+Lk EFs
  Phvul.002G064100.1 208 ELKDRLLRKYGSHIGNLKLEFS 229
                         9********************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM012557.3E-2470114IPR005540KNOX1
PfamPF037904.0E-2372113IPR005540KNOX1
SMARTSM012564.7E-27120171IPR005541KNOX2
PfamPF037914.9E-25124170IPR005541KNOX2
PROSITE profilePS5121310.441208228IPR005539ELK domain
SMARTSM011882.4E-6208229IPR005539ELK domain
PfamPF037897.3E-9208229IPR005539ELK domain
PROSITE profilePS5007113.281228291IPR001356Homeobox domain
SuperFamilySSF466891.11E-19229300IPR009057Homeodomain-like
SMARTSM003892.3E-14230295IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.601.9E-28233292IPR009057Homeodomain-like
CDDcd000869.73E-15240292No hitNo description
PfamPF059203.7E-18248287IPR008422Homeobox KN domain
PROSITE patternPS000270266289IPR017970Homeobox, conserved site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010073Biological Processmeristem maintenance
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 312 aa     Download sequence    Send to blast
MDEMYGVPEY ADKPLMTPEN LIFPPDYPAF LTAARIPIFG SDDLFSGEPS AASASPAGIP  60
RHQDDDVATT VMKAKIASHP HYPRLLQAYI DCQKVGAPPE IARLLEEIRR ENDLCKSDVV  120
STCFGADPEL DEFMETYCDM LVKYKSDLAR PFDEATTFLN KIEMQLSHLC TGASVSTVSD  180
DGGVSSEEDL STGDGDGQDG QSKGEDRELK DRLLRKYGSH IGNLKLEFSK KKKKGKLPKE  240
ARQTLLQWWN VHYKWPYPTE ADKIELAKST GLDQKQINNW FINQRKRHWK PSENMQFSMM  300
ENLNGRFLGE E*
Functional Description ? help Back to Top
Source Description
UniProtPlays a role in meristem function. Contributes to the shoot apical meristem (SAM) maintenance and organ separation by controlling boundary establishment in embryo in a CUC1, CUC2 and STM-dependent manner. Involved in maintaining cells in an undifferentiated, meristematic state. Probably binds to the DNA sequence 5'-TGAC-3'. {ECO:0000269|PubMed:16798887}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPhvul.002G064100.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Seems to be repressed by AS2 and AS1 but induced by STM, CUC1 and CUC2. {ECO:0000269|PubMed:11311158, ECO:0000269|PubMed:16798887}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKC2569680.0KC256968.1 Caragana korshinskii Knotted-1 homeobox protein (KN-1) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007157365.10.0hypothetical protein PHAVU_002G064100g
RefseqXP_007157366.10.0hypothetical protein PHAVU_002G064100g
SwissprotQ84JS61e-146KNAT6_ARATH; Homeobox protein knotted-1-like 6
TrEMBLV7CGV50.0V7CGV5_PHAVU; Uncharacterized protein
STRINGXP_007157365.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF62034125
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G23380.11e-116KNOTTED1-like homeobox gene 6
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Khan M, et al.
    Repression of Lateral Organ Boundary Genes by PENNYWISE and POUND-FOOLISH Is Essential for Meristem Maintenance and Flowering in Arabidopsis.
    Plant Physiol., 2015. 169(3): p. 2166-86
    [PMID:26417006]