PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Phvul.002G084000.1

Common Name

PHAVU_002G084000g

Organism

Phaseolus vulgaris

Taxonomic ID

3885

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus

Family

Dof

Protein Properties

Length: 481aa MW: 52071.6 Da PI: 7.7876

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Phvul.002G084000.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	125.3	2e-39	135	195	2	62
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 ++k+l+cprC+s++tkfCyynny+++qPr+fCk C+ryWt+GG++rnvPvG+grrknk++s Phvul.002G084000.1 135 PDKILPCPRCNSMDTKFCYYNNYNVNQPRHFCKHCQRYWTAGGTMRNVPVGAGRRKNKNTS 195 7899******************************************************987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	5.0E-31	121	192	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	6.2E-32	137	193	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	28.733	139	193	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	141	177	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 481 aa Download sequence Send to blast
MSGAVKDSAI KLFGRTISLS RHHQVSANGS SSEPAPPQDY SHHHSPPSSS SFPREVMSTT 60 EREPERDKEP SGKELTSTQD DEALHEELKS PTSSCNLENP KTPSTEIETS LMKSPKKGDQ 120 TDTTSASEDK TPKKPDKILP CPRCNSMDTK FCYYNNYNVN QPRHFCKHCQ RYWTAGGTMR 180 NVPVGAGRRK NKNTSSAASH YRQIMVPETL QNGSLHSAVL TFGSDFPLCD SMASVLSLAE 240 KTQNGVLNGF HSPKHNVSTV NNNNSGDDIN SVGASVMAST LCEKRDNATS SHDESVDKIY 300 HQGFSPQLCL PGSSSSSSPW PYPWNPAMTP SAFYQPVSFY PTQAFWGCMP PPSWSVNYQS 360 ASSSGPNSPT LGKHSRDGDI LLQKPGTESS SNMAENSNTV LIPKTLRIDD PTEAAKSSIW 420 STLGIKNEKG NSLNGGGLFK AFASKGGSDD KKNHVVVEAS PVLQANPAAL SRSLVFHERT 480 *

Sequence ? help Back to Top

Protein Sequence Length: 481 aa Download sequence Send to blast

MSGAVKDSAI KLFGRTISLS RHHQVSANGS SSEPAPPQDY SHHHSPPSSS SFPREVMSTT  60
EREPERDKEP SGKELTSTQD DEALHEELKS PTSSCNLENP KTPSTEIETS LMKSPKKGDQ  120
TDTTSASEDK TPKKPDKILP CPRCNSMDTK FCYYNNYNVN QPRHFCKHCQ RYWTAGGTMR  180
NVPVGAGRRK NKNTSSAASH YRQIMVPETL QNGSLHSAVL TFGSDFPLCD SMASVLSLAE  240
KTQNGVLNGF HSPKHNVSTV NNNNSGDDIN SVGASVMAST LCEKRDNATS SHDESVDKIY  300
HQGFSPQLCL PGSSSSSSPW PYPWNPAMTP SAFYQPVSFY PTQAFWGCMP PPSWSVNYQS  360
ASSSGPNSPT LGKHSRDGDI LLQKPGTESS SNMAENSNTV LIPKTLRIDD PTEAAKSSIW  420
STLGIKNEKG NSLNGGGLFK AFASKGGSDD KKNHVVVEAS PVLQANPAAL SRSLVFHERT  480
*

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that binds specifically to a 5'-AA[AG]G-3' consensus core sequence (By similarity). Regulates a photoperiodic flowering response. Transcriptional repressor of 'CONSTANS' expression. {ECO:0000250, ECO:0000269\|PubMed:19619493}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Phvul.002G084000.1

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Circadian-regulation. Highly expressed at the beginning of the light period, then decreases, reaching a minimum between 16 and 29 hours after dawn before rising again at the end of the day. {ECO:0000269\|PubMed:19619493}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AP015043	0.0	AP015043.1 Vigna angularis var. angularis DNA, chromosome 10, almost complete sequence, cultivar: Shumari.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_007157611.1	0.0	hypothetical protein PHAVU_002G084000g
Swissprot	Q8LFV3	3e-87	CDF3_ARATH; Cyclic dof factor 3
TrEMBL	V7CJX6	0.0	V7CJX6_PHAVU; Uncharacterized protein
STRING	XP_007157611.1	0.0	(Phaseolus vulgaris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF625	34	147

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G47500.1	1e-89	cycling DOF factor 3

Link Out ? help Back to Top
Phytozome	Phvul.002G084000.1
Entrez Gene	18637340

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Corrales AR, et al. Multifaceted role of cycling DOF factor 3 (CDF3) in the regulation of flowering time and abiotic stress responses in Arabidopsis. Plant Cell Environ., 2017. 40(5): p. 748-764 [PMID:28044345] Renau-Morata B, et al. Ectopic Expression of CDF3 Genes in Tomato Enhances Biomass Production and Yield under Salinity Stress Conditions. Front Plant Sci, 2017. 8: p. 660 [PMID:28515731] Henriques R, et al. The antiphasic regulatory module comprising CDF5 and its antisense RNA FLORE links the circadian clock to photoperiodic flowering. New Phytol., 2017. 216(3): p. 854-867 [PMID:28758689]