PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Phvul.002G085700.1
Common NamePHAVU_002G085700g
Organism
Phaseolus vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
Family NAC
Protein Properties Length: 409aa    MW: 45853.5 Da    PI: 7.969
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Phvul.002G085700.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM157.17.5e-4911227128
                 NAM   7 FhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk.k 96 
                         FhPtdeelv +yLk+k+++++l++ e ik++diyk++PwdLpk ++++ekewyf+++rd+ky+++ r+nr+t +g+Wkatg+d++++s+ +
  Phvul.002G085700.1   1 FHPTDEELVGFYLKRKIQQRPLTI-ELIKQLDIYKYDPWDLPKLATTGEKEWYFYCPRDRKYRNSARPNRVTGAGFWKATGTDRPIYSSeG 90 
                         9*********************99.89***************8888999***************************************956 PP

                 NAM  97 gelvglkktLvfykgrapkgektdWvmheyrl 128
                         ++ +glkk+Lvfykgra kg+ktdW+mhe+rl
  Phvul.002G085700.1  91 SKCIGLKKSLVFYKGRAAKGVKTDWMMHEFRL 122
                         677***************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100554.0931152IPR003441NAC domain
PfamPF023652.1E-221122IPR003441NAC domain
SuperFamilySSF1019419.42E-541152IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 409 aa     Download sequence    Send to blast
FHPTDEELVG FYLKRKIQQR PLTIELIKQL DIYKYDPWDL PKLATTGEKE WYFYCPRDRK  60
YRNSARPNRV TGAGFWKATG TDRPIYSSEG SKCIGLKKSL VFYKGRAAKG VKTDWMMHEF  120
RLPSLTDSLS TKYVDKTIPA NGSWAICRIF KKTNSTAQRA LSHSWVSSLP ETRTSHHILT  180
KDQDSTQFCS DISFTKKTTL ATQYCTNNYN DGPPLTPNSS TALCPFDAVS YKSIINPLLY  240
KAFDNFPISN GDLGTSFLFS SSPFETSDGN TNAKSTMDVS SMLLNMSSSV LGDFNKTSED  300
NTNTSTSFGG VQEQCSGYPL PFLREMQTTF GEPQYDNINA LVKAPNVNMP RVEDQELGLE  360
FETVRSIGFP FSGMPFNIGD AWKSNMLWDT SSFPSDVSST YSTTKCNT*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A8e-50115923171NO APICAL MERISTEM PROTEIN
1ut4_B8e-50115923171NO APICAL MERISTEM PROTEIN
1ut7_A8e-50115923171NO APICAL MERISTEM PROTEIN
1ut7_B8e-50115923171NO APICAL MERISTEM PROTEIN
4dul_A8e-50115923171NAC domain-containing protein 19
4dul_B8e-50115923171NAC domain-containing protein 19
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtPromotes periclinal root capforming cell divisions. Activates expression of its negative regulator SMB in a feedback loop for controlled switches in cell division plane. {ECO:0000269|PubMed:19081078}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPhvul.002G085700.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Repressed by SMB in oriented-divised root cap stem cells. {ECO:0000269|PubMed:19081078}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150430.0AP015043.1 Vigna angularis var. angularis DNA, chromosome 10, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007157629.10.0hypothetical protein PHAVU_002G085700g, partial
SwissprotQ9ZVH01e-101FEZ_ARATH; Protein FEZ
TrEMBLV7CJT90.0V7CJT9_PHAVU; Uncharacterized protein (Fragment)
STRINGXP_007157629.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF20133490
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G26870.11e-101NAC family protein
Publications ? help Back to Top
  1. Bennett T,van den Toorn A,Willemsen V,Scheres B
    Precise control of plant stem cell activity through parallel regulatory inputs.
    Development, 2014. 141(21): p. 4055-64
    [PMID:25256342]