PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Phvul.002G087500.1
Common NamePHAVU_002G087500g
Organism
Phaseolus vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
Family C2H2
Protein Properties Length: 542aa    MW: 59714.9 Da    PI: 6.6923
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Phvul.002G087500.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H211.80.00073446468123
                         EEETTTTEEESSHHHHHHHHHHT CS
             zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                         ++Cp+C k+F++   L  H r+H
  Phvul.002G087500.1 446 HECPICLKVFPSGQALGGHKRSH 468
                         79*******************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576672.39E-5634No hitNo description
SMARTSM003551931IPR015880Zinc finger, C2H2-like
PfamPF139126.4E-5931IPR007087Zinc finger, C2H2
PROSITE profilePS501579.307936IPR007087Zinc finger, C2H2
PROSITE patternPS0002801131IPR007087Zinc finger, C2H2
SMARTSM003550.1795117IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.82795122IPR007087Zinc finger, C2H2
SuperFamilySSF576671.59E-796117No hitNo description
PfamPF139121.7E-697119IPR007087Zinc finger, C2H2
PROSITE patternPS00028097117IPR007087Zinc finger, C2H2
SuperFamilySSF576671.59E-7345372No hitNo description
PROSITE profilePS501579.556350377IPR007087Zinc finger, C2H2
SMARTSM003550.36350372IPR015880Zinc finger, C2H2-like
PfamPF139121.4E-10350374IPR007087Zinc finger, C2H2
PROSITE patternPS000280352372IPR007087Zinc finger, C2H2
SMARTSM003550.071446468IPR015880Zinc finger, C2H2-like
PfamPF139122.7E-13446469IPR007087Zinc finger, C2H2
PROSITE profilePS501578.995446468IPR007087Zinc finger, C2H2
PROSITE patternPS000280448469IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 542 aa     Download sequence    Send to blast
MEEDQEVKHL CKFCSKSFPC GRSLGGHMRS HVTNVSTETE KLSFFSNNNG GGDRDTGMMG  60
SEGGTSNGGY GLRENPKKTS RFTDSIEDTI LVLDKLCKEC GKGFHSWKAL FGHMKCHSER  120
VSQNNSSLLE DQDSWTENTN GSQKMVLDDS HSDDEATAPN RRRRSKRRRT RYVAPSTSSV  180
SFVSESEQEQ EEVAMSLMML SRDLSPWCGL SSVNSLHFES PSLVPTNLDS KAEGKRVVSN  240
GSVKKVTKPK DMKWEFGNLD ASNLNSKGTE STGFGDMTMV SVQGNEKKAE LDTNSAFEDN  300
GIDDDRNNKY TSIKAKYLDS EVKASSSKSW VKNKSPEAES SKSSNKRGKF ECTTCKKIFH  360
SYQALGGHRA SHKKIKGCFA SRNESSENST EFEADLSPDP TTESKLLKNE YVEEHEMVTV  420
TATGTTATGF DNEEERERES KKGKGHECPI CLKVFPSGQA LGGHKRSHHL PSGSEITRNC  480
QSQTVVLGGE APEIRDFFDL NLPASTEEEG NSHGRAAEPY KPWWVVGGSH KQEALVGLIS  540
N*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPhvul.002G087500.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150350.0AP015035.1 Vigna angularis var. angularis DNA, chromosome 2, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007157656.10.0hypothetical protein PHAVU_002G087500g
TrEMBLV7CK530.0V7CK53_PHAVU; Uncharacterized protein
STRINGXP_007157656.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF11013080
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G45120.19e-26C2H2-like zinc finger protein