PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Phvul.002G089700.1
Common NamePHAVU_002G089700g
Organism
Phaseolus vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
Family WRKY
Protein Properties Length: 439aa    MW: 48142 Da    PI: 7.7677
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Phvul.002G089700.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY96.51.8e-30144203159
                         ---SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
                WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                         ++Dg++WrKYGqK+ kg+++pr+YYrCt +  Cpv+k+v+r+aed +++++tYeg+Hnh+
  Phvul.002G089700.1 144 MNDGCQWRKYGQKMAKGNPCPRAYYRCTVSpLCPVRKQVQRCAEDMSILITTYEGTHNHP 203
                         58**************************998****************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.803.9E-32130205IPR003657WRKY domain
SuperFamilySSF1182904.05E-27137205IPR003657WRKY domain
PROSITE profilePS5081128.392139205IPR003657WRKY domain
SMARTSM007743.1E-37144204IPR003657WRKY domain
PfamPF031069.7E-27145203IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 439 aa     Download sequence    Send to blast
MEQAREENKM LKFLDILEQD KPEDATNAKG VSSQSEESEP LSLSLGISFK GKIKGKRKQD  60
EGMDRGLTLG LDINLDPVDH AEAANISSSA SSLGGGKEEE PSEMWPPSKV LKTMKNVDKS  120
EAFQNDQPKK TRVSIRARCD TQTMNDGCQW RKYGQKMAKG NPCPRAYYRC TVSPLCPVRK  180
QVQRCAEDMS ILITTYEGTH NHPLPMSATA MACTTSAAAS MLQCPSLSSE HGHGLVNSAI  240
SSITKFSAPN YNPHNALNFS TYQISRPHQF YFPNSSISSL NYHPTITLDL TAPPTASNSS  300
FPHMPKYSST NLNFSSDFSP PQSIMPPSPW SSYSGYFNSR ALTHNINHGG YFLNPGSQNQ  360
PLEHLHQPIC MTNNNFPQRF LPDSIIAATK AITSNPKFHS VLATALTTYV GNGASGDTLR  420
ENHVLENAEL SLKLCSEK*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A1e-20131205174WRKY transcription factor 1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPhvul.002G089700.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150431e-153AP015043.1 Vigna angularis var. angularis DNA, chromosome 10, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007157685.10.0hypothetical protein PHAVU_002G089700g
TrEMBLV7CHU60.0V7CHU6_PHAVU; Uncharacterized protein
STRINGXP_007157685.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF65034134
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G15130.11e-50WRKY DNA-binding protein 72