PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Phvul.002G091100.1
Common NamePHAVU_002G091100g
Organism
Phaseolus vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
Family WRKY
Protein Properties Length: 455aa    MW: 49702.1 Da    PI: 8.8607
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Phvul.002G091100.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY101.74.1e-32182238259
                         --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
                WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                         dDg+nWrKYGqK+vkgsefprsYY+Ct+++Cpvkkkvers  +++v+ i+Y+geHnh+
  Phvul.002G091100.1 182 DDGHNWRKYGQKQVKGSEFPRSYYKCTHPHCPVKKKVERSL-EGHVTAIIYKGEHNHQ 238
                         8****************************************.***************8 PP
2WRKY106.91e-33342400159
                         ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
                WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                         ldDgy+WrKYGqK+vkg+++prsYY+Ct++gC+v+k+ver+++dpk+v++tYeg+Hnh+
  Phvul.002G091100.1 342 LDDGYRWRKYGQKVVKGNPYPRSYYKCTTPGCKVRKHVERASTDPKAVITTYEGKHNHD 400
                         59********************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.809.4E-29167240IPR003657WRKY domain
SuperFamilySSF1182903.66E-25179240IPR003657WRKY domain
SMARTSM007741.0E-34181239IPR003657WRKY domain
PROSITE profilePS5081122.504182240IPR003657WRKY domain
PfamPF031061.3E-24182238IPR003657WRKY domain
Gene3DG3DSA:2.20.25.802.2E-37327402IPR003657WRKY domain
SuperFamilySSF1182909.94E-30334402IPR003657WRKY domain
PROSITE profilePS5081138.675337402IPR003657WRKY domain
SMARTSM007742.9E-39342401IPR003657WRKY domain
PfamPF031062.9E-26343400IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 455 aa     Download sequence    Send to blast
MAGGGSGNRP PWKEAAPPRP TISLPPRAAS METLFNGGFS PGPMTLLSGF LTDGDDCNKS  60
FSQLLAGAMA SPVAAAVHDS SGFFSPSQVS FGMTHQQAIA QVSVQASQAN SNMNIHPEHS  120
MSVSVSSPTS FTQVPAATSN TKQQLIPPLT ADSRATMTEF AHHSHSEQKL QSSSLNVDKP  180
ADDGHNWRKY GQKQVKGSEF PRSYYKCTHP HCPVKKKVER SLEGHVTAII YKGEHNHQRP  240
LPNKRSKDAL TSNENSNMQW NASAYQGTTK MDPESSQATA DHLSGSDSEE VGDHEAEEDE  300
KNVEPHPKRS KTEVTNLDPT FSHRTVTEPR IIVQTTSEVD LLDDGYRWRK YGQKVVKGNP  360
YPRSYYKCTT PGCKVRKHVE RASTDPKAVI TTYEGKHNHD VPAAKTSSHV MAGNTSQIKP  420
QNSNPGKHSF GTRDIGGNEQ QPVARLRLKE EKIT*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A7e-44182403878Probable WRKY transcription factor 4
2lex_A7e-44182403878Probable WRKY transcription factor 4
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPhvul.002G091100.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By salicylic acid and during leaf senescence. {ECO:0000269|PubMed:11449049, ECO:0000269|PubMed:11722756}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150430.0AP015043.1 Vigna angularis var. angularis DNA, chromosome 10, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007157702.10.0hypothetical protein PHAVU_002G091100g
SwissprotQ9ZQ701e-132WRKY3_ARATH; Probable WRKY transcription factor 3
TrEMBLV7CLE80.0V7CLE8_PHAVU; Uncharacterized protein
STRINGXP_007157702.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF154534100
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G13960.21e-119WRKY DNA-binding protein 4
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Aamir M, et al.
    Structural and Functional Insights into WRKY3 and WRKY4 Transcription Factors to Unravel the WRKY-DNA (W-Box) Complex Interaction in Tomato (Solanum lycopersicum L.). A Computational Approach.
    Front Plant Sci, 2017. 8: p. 819
    [PMID:28611792]