PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Phvul.002G100500.1

Common Name

PHAVU_002G100500g

Organism

Phaseolus vulgaris

Taxonomic ID

3885

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus

Family

LBD

Protein Properties

Length: 113aa MW: 12616.8 Da PI: 9.1652

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Phvul.002G100500.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	73.4	4.4e-23	58	104	1	47
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllk 47 +CaaCk+lrr+Ca+dCv+apyfpa++p+kfanvh++FGasn+ k+l+ Phvul.002G100500.1 58 PCAACKLLRRRCAQDCVFAPYFPADEPHKFANVHRVFGASNINKMLQ 104 7********************************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	17.125	57	112	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	3.6E-22	58	104	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 113 aa Download sequence Send to blast
MQASSIPSLS LLPFTFLHFI FSYKSFSFLL CHSHVLIELH NNKGNMKDGG RKQGAPSPCA 60 ACKLLRRRCA QDCVFAPYFP ADEPHKFANV HRVFGASNIN KMLQVHSLCC LY*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	7e-21	54	103	7	56	LOB family transfactor Ramosa2.1
5ly0_B	7e-21	54	103	7	56	LOB family transfactor Ramosa2.1
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Phvul.002G100500.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AP015034	1e-100	AP015034.1 Vigna angularis var. angularis DNA, chromosome 1, almost complete sequence, cultivar: Shumari.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_007157815.1	2e-78	hypothetical protein PHAVU_002G100500g
Swissprot	Q9SHE9	4e-33	LBD4_ARATH; LOB domain-containing protein 4
TrEMBL	V7CI67	4e-77	V7CI67_PHAVU; Uncharacterized protein
STRING	XP_007157815.1	7e-78	(Phaseolus vulgaris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1334	34	105

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G31320.1	2e-35	LOB domain-containing protein 4

Link Out ? help Back to Top
Phytozome	Phvul.002G100500.1
Entrez Gene	18637509