PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Phvul.002G100800.2
Common NamePHAVU_002G100800g
Organism
Phaseolus vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
Family B3
Protein Properties Length: 190aa    MW: 21347.6 Da    PI: 6.7498
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Phvul.002G100800.2genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B3382.8e-121041583994
                         EETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EE CS
                  B3  39 edesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvv 94 
                          +  g+sW++ ++  +++++++  +GWk+F+ +n L+ gD ++F l+++s+++  +
  Phvul.002G100800.2 104 LTYMGKSWDMVYC-GQNKQQVFNVAGWKKFAVENCLRIGDACIFDLMESSDKKIIF 158
                         55679*******5.44445677789*********************9888776655 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd100174.64E-1173164No hitNo description
SuperFamilySSF1019363.92E-1299164IPR015300DNA-binding pseudobarrel domain
PfamPF023625.1E-10102159IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.106.6E-11106164IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086310.489108166IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 190 aa     Download sequence    Send to blast
MQKILTSLEA EASTGFKSHS SCSTMSSRRS NGRASGRVAL EKEVPLPQLP DHTTNLQWDE  60
VKPLSGKPYS HNILSPTNLC PRYYMWLASN LRLELPSCEV PTILTYMGKS WDMVYCGQNK  120
QQVFNVAGWK KFAVENCLRI GDACIFDLME SSDKKIIFEV QILRGDIPSE ILENEMITGQ  180
SREMPIVLN*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPhvul.002G100800.2
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150341e-121AP015034.1 Vigna angularis var. angularis DNA, chromosome 1, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007157819.11e-141hypothetical protein PHAVU_002G100800g
TrEMBLV7CKD21e-139V7CKD2_PHAVU; Uncharacterized protein
STRINGXP_007157818.11e-129(Phaseolus vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G31680.11e-06B3 family protein