PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Phvul.002G114500.1
Common NamePHAVU_002G114500g
Organism
Phaseolus vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
Family SBP
Protein Properties Length: 126aa    MW: 13982.8 Da    PI: 9.1885
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Phvul.002G114500.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP105.73.3e-3347117272
                         -SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT----- CS
                 SBP   2 CqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhner 72 
                         Cq+++C + l+ ak+y+rrhkvCe hskapvvlvs ++qrfCqqCs+fhel efDe+krsCr+ La+   r
  Phvul.002G114500.1  47 CQADECGVKLNMAKRYNRRHKVCERHSKAPVVLVSSIRQRFCQQCSKFHELAEFDETKRSCRKTLARRKTR 117
                         ******************************************************************98777 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1100.101.2E-3040108IPR004333Transcription factor, SBP-box
PROSITE profilePS5114125.70944121IPR004333Transcription factor, SBP-box
SuperFamilySSF1036122.35E-3146117IPR004333Transcription factor, SBP-box
PfamPF031101.6E-2847117IPR004333Transcription factor, SBP-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 126 aa     Download sequence    Send to blast
MDNGDDKEES SEGEAENGAK MVQKITIMLV CGNGKGSRTG SSSSSFCQAD ECGVKLNMAK  60
RYNRRHKVCE RHSKAPVVLV SSIRQRFCQQ CSKFHELAEF DETKRSCRKT LARRKTRTDM  120
SLGGD*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ul4_A1e-2539112376squamosa promoter binding protein-like 4
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTrans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3' (By similarity). May be involved in panicle development. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPhvul.002G114500.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Negatively regulated by microRNAs miR156b and miR156h. {ECO:0000305|PubMed:16861571}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150437e-79AP015043.1 Vigna angularis var. angularis DNA, chromosome 10, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007157979.13e-88hypothetical protein PHAVU_002G114500g
RefseqXP_007157980.13e-88hypothetical protein PHAVU_002G114500g
SwissprotQ6Z4611e-29SPL13_ORYSJ; Squamosa promoter-binding-like protein 13
TrEMBLV7CKU07e-87V7CKU0_PHAVU; Uncharacterized protein
STRINGXP_007157979.11e-87(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF53534153
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G15270.14e-27squamosa promoter binding protein-like 5