PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Phvul.002G115500.1
Common NamePHAVU_002G115500g
Organism
Phaseolus vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
Family C2H2
Protein Properties Length: 289aa    MW: 30224.3 Da    PI: 4.9349
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Phvul.002G115500.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H212.70.0004159180223
                         EETTTTEEESSHHHHHHHHHHT CS
             zf-C2H2   2 kCpdCgksFsrksnLkrHirtH 23 
                         +Cp C k F+++     H+r H
  Phvul.002G115500.1 159 TCPLCRKEFPTWKGAFGHMRAH 180
                         6*******************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE patternPS000280160180IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 289 aa     Download sequence    Send to blast
MEKHSPSLGP FSNNSLSAPS ADTLTLIINP INDNLQGEST MKTPWQVLDE LRGESSDDSG  60
GEKDVVGGSG NYIRDKNGVG GGSVDRNNNG IRGRSGAAEN GNGGDVGGGI PPVTVAVAVA  120
VGGGGGRMEL VESSVVREGV VGKKRKTSIV RDPPTGKPTC PLCRKEFPTW KGAFGHMRAH  180
PDRDYRGFFK PPVFGSPSST QHHPLTNANK GNTSQCDGGE VNHGEKGSAP PPIQVVMFDL  240
NEPPTAVENA AESVTEKSDE NGKIFGFDLN AEGNVFGFDL NEMPLTEE*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPhvul.002G115500.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150431e-176AP015043.1 Vigna angularis var. angularis DNA, chromosome 10, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007157993.10.0hypothetical protein PHAVU_002G115500g
TrEMBLV7CIF60.0V7CIF6_PHAVU; Uncharacterized protein
STRINGXP_007157993.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF102022128
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G35610.14e-13C2H2 family protein