PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Phvul.002G116000.1

Common Name

PHAVU_002G116000g

Organism

Phaseolus vulgaris

Taxonomic ID

3885

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus

Family

Nin-like

Protein Properties

Length: 333aa MW: 38227.6 Da PI: 6.8707

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Phvul.002G116000.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	83.7	1.7e-26	205	254	3	52
RWP-RK 3 keisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 ++isl+dl +yF +pi +A+++L+v+lTvLKr+CR++GI+RWPhRkiksl Phvul.002G116000.1 205 AKISLSDLVQYFGMPIVEASRNLKVGLTVLKRKCREFGIPRWPHRKIKSL 254 589*********************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51519	19.577	189	274	IPR003035	RWP-RK domain
Pfam	PF02042	1.3E-21	207	254	IPR003035	RWP-RK domain

Sequence ? help Back to Top
Protein Sequence Length: 333 aa Download sequence Send to blast
MDFSQTNKTT LLTNLLVFNN TVQPELMRSL HVYRQGDGEE RTVEREFVFS DCGSYVEMQA 60 TPVLRLVKSH VSEVCEGYKN GVWLCILAFH ADNTPQFCRI PPLLLASRNP KLQMIPNLLR 120 DLHMIYKLDR KEEDRHTTLG STGEECQGNS NNFQPSEKVF PVLDQDLNYL PYEEDESELL 180 DNETDVESSP GLPGKKKRAP SDLVAKISLS DLVQYFGMPI VEASRNLKVG LTVLKRKCRE 240 FGIPRWPHRK IKSLDSLIQD LQEEAQNQEL ENMEAAMAVA KRQKMLESEK ENIEKKPFMD 300 IQSETKRFRQ DVFKRRHRAR AVGKQNPTVS NT*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Phvul.002G116000.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	BT090377	0.0	BT090377.1 Soybean clone JCVI-FLGm-4G14 unknown mRNA.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_007157999.1	0.0	hypothetical protein PHAVU_002G116000g
TrEMBL	V7CKW1	0.0	V7CKW1_PHAVU; Uncharacterized protein
STRING	XP_007157999.1	0.0	(Phaseolus vulgaris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF9646	30	42

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G35590.1	2e-77	RWP-RK domain-containing protein

Link Out ? help Back to Top
Phytozome	Phvul.002G116000.1
Entrez Gene	18637670