PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Phvul.002G123700.1
Common NamePHAVU_002G123700g
Organism
Phaseolus vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
Family BES1
Protein Properties Length: 658aa    MW: 74578.9 Da    PI: 6.3047
Description BES1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Phvul.002G123700.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF822159.22.8e-49551972140
              DUF822   2 gsgrkptwkErEnnkrRERrRRaiaakiyaGLRaqGnyklpkraDnneVlkALcreAGwvvedDGttyrkgskpleeaeaagssasaspes 92 
                         ++g+k+++kE+E++k+RER+RRai+++++aGLR++Gn++lp+raD+n+Vl+AL+reAGwvv++DGttyr+ + p+   +++gs+a +s+es
  Phvul.002G123700.1  55 AKGKKEREKEKERTKLRERHRRAITSRMLAGLRQYGNFPLPARADMNDVLAALAREAGWVVDADGTTYRQ-CPPP---SHMGSFAAKSVES 141
                         689******************************************************************5.4444...69*********** PP

              DUF822  93 slq.sslkssalaspvesysaspksssfpspssldsislasa.......asllpvl 140
                         +l+  sl++++++  +e++ ++++ ++ +sp+s+ds+ +a+        ++ +p+ 
  Phvul.002G123700.1 142 QLSgGSLRNCSVKETIENQTSVLRIDECLSPASIDSVVIAERdsrnekyTNASPIN 197
                         ***9***********************************98865555554444544 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF056871.7E-5056202IPR008540BES1/BZR1 plant transcription factor, N-terminal
SuperFamilySSF514451.05E-157220654IPR017853Glycoside hydrolase superfamily
Gene3DG3DSA:3.20.20.801.3E-171223653IPR013781Glycoside hydrolase, catalytic domain
PfamPF013732.6E-86244618IPR001554Glycoside hydrolase, family 14
PRINTSPR007509.0E-57260274IPR001554Glycoside hydrolase, family 14
PRINTSPR007509.0E-57281299IPR001554Glycoside hydrolase, family 14
PRINTSPR007509.0E-57303324IPR001554Glycoside hydrolase, family 14
PRINTSPR007509.0E-57396418IPR001554Glycoside hydrolase, family 14
PRINTSPR007509.0E-57469488IPR001554Glycoside hydrolase, family 14
PRINTSPR007509.0E-57503519IPR001554Glycoside hydrolase, family 14
PRINTSPR007509.0E-57520531IPR001554Glycoside hydrolase, family 14
PRINTSPR007509.0E-57538561IPR001554Glycoside hydrolase, family 14
PRINTSPR007509.0E-57576598IPR001554Glycoside hydrolase, family 14
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000272Biological Processpolysaccharide catabolic process
GO:0048831Biological Processregulation of shoot system development
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0016161Molecular Functionbeta-amylase activity
Sequence ? help Back to Top
Protein Sequence    Length: 658 aa     Download sequence    Send to blast
MKSINDDGST QDLDPQSDHS SDYLAHPNSN PHPHPHTRRP RGFAAAAAAT TNSVAKGKKE  60
REKEKERTKL RERHRRAITS RMLAGLRQYG NFPLPARADM NDVLAALARE AGWVVDADGT  120
TYRQCPPPSH MGSFAAKSVE SQLSGGSLRN CSVKETIENQ TSVLRIDECL SPASIDSVVI  180
AERDSRNEKY TNASPINTVD CLEADQLMQD IHSGVHENDF TGTPYVPVYV KLPAGIINKF  240
CQLIDPEGIR EELMHMKSLN VDGVVVDCWW GIVEGWSSQK YVWSGYRELF NIVRKFKLKL  300
QVVMAFHECG GNDSSDALIS LPQWVLDIGK DNQDIFFTDR EGRRNTECLS WGIDKERVLK  360
GRTGIEVYFD MMRSFRTEFD DLFAEGLIYA VEVGLGASGE LKYPSFSERM GWRYPGIGEF  420
QCYDKYLQHS LRKAAKLRGH SFWARGPDNA GHYNSMPHET GFFCERGDYD NYYGRFFLHW  480
YSQTLIDHAD NVLSLATLAF EETKIIVKVP AVYWWYKTPS HAAELTAGYH NPTNQDGYYP  540
VFEVLRKHAV TMKFVCLGFH LSSQEANESL IDPEGLSWQV LNSAWDRGLM AGGENALLCY  600
DREGYKRLVD TAKPRNDPDH RHFSFFVYQQ PSLLQANVCL SELDFFVKCM HGEMTDP*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wdq_A1e-12722561511401Beta-amylase
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00543DAPTransfer from AT5G45300Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapPhvul.002G123700.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150431e-167AP015043.1 Vigna angularis var. angularis DNA, chromosome 10, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007158095.10.0hypothetical protein PHAVU_002G123700g
SwissprotQ9FH800.0BAM8_ARATH; Beta-amylase 8
TrEMBLV7CIY10.0V7CIY1_PHAVU; Beta-amylase
STRINGXP_007158095.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF119023032
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G45300.10.0beta-amylase 2
Publications ? help Back to Top
  1. Soyk S, et al.
    The Enzyme-Like Domain of Arabidopsis Nuclear β-Amylases Is Critical for DNA Sequence Recognition and Transcriptional Activation.
    Plant Cell, 2014. 26(4): p. 1746-1763
    [PMID:24748042]