PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Phvul.002G136000.1
Common NamePHAVU_002G136000g
Organism
Phaseolus vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
Family bZIP
Protein Properties Length: 398aa    MW: 42247.3 Da    PI: 6.1197
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Phvul.002G136000.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_169.36.1e-22301363163
                         XXXXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
              bZIP_1   1 ekelkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklksev 63 
                         e+e+kr+rrkq+NRe+ArrsR+RK+ae++eL++++++L++eN +L++e+++++  +++l se+
  Phvul.002G136000.1 301 EREIKRQRRKQSNRESARRSRLRKQAECDELAQRAEALKEENASLRSEVSRIRSDYEQLLSEN 363
                         89***********************************************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF077771.6E-29196IPR012900G-box binding protein, multifunctional mosaic region
PfamPF165965.1E-56135274No hitNo description
Gene3DG3DSA:1.20.5.1707.1E-17294360No hitNo description
PfamPF001709.1E-21301363IPR004827Basic-leucine zipper domain
SMARTSM003381.4E-22301365IPR004827Basic-leucine zipper domain
PROSITE profilePS5021713.185303366IPR004827Basic-leucine zipper domain
SuperFamilySSF579593.88E-11304360No hitNo description
CDDcd147025.66E-24306356No hitNo description
PROSITE patternPS000360308323IPR004827Basic-leucine zipper domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 398 aa     Download sequence    Send to blast
MGSSEMDKTP KEKESKTPPP TSQEQSSTTA TGTINPDWPG FQAYSPIPPH GFLASSPQAH  60
PYMWGVQQFM PPYGTPPHPY VAMYPPGGIY AHPSMPPGSY PFSPFAMPSP NGIAEASGNT  120
PGSMEADGKP PEVKEKLPIK RSKGSLGSLN MITGKNNEHG KTTGTSANGI HSKSGDSASE  180
GEGTSEGSDA NSQNDSQMKS GGRQDSFEDE PSQNGTSAYT SQNGGISTPA TVVNQNVPII  240
PISAGGAPGA VPGPTTNLNI GMDYWGTPAP SNIPALGRKV PSTAVAGSRD SVQSQLWLQD  300
EREIKRQRRK QSNRESARRS RLRKQAECDE LAQRAEALKE ENASLRSEVS RIRSDYEQLL  360
SENTALKERL GELPANDQHV GNEAQQNGQT EGVQGGH*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1317323RRSRLRK
2317324RRSRLRKQ
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds to the G-box motif (5'-CACGTG-3') and other cis-acting elements with 5'-ACGT-3' core, such as Hex, C-box and as-1 motifs. Possesses high binding affinity to G-box, much lower affinity to Hex and C-box, and little affinity to as-1 element (PubMed:18315949). G-box and G-box-like motifs are cis-acting elements defined in promoters of certain plant genes which are regulated by such diverse stimuli as light-induction or hormone control (Probable). Binds to the G-box motif 5'-CACGTG-3' of LHCB2.4 (At3g27690) promoter. May act as transcriptional repressor in light-regulated expression of LHCB2.4. Binds DNA as monomer. DNA-binding activity is redox-dependent (PubMed:22718771). {ECO:0000269|PubMed:18315949, ECO:0000269|PubMed:22718771, ECO:0000305|PubMed:18315949}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00291DAPTransfer from AT2G35530Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapPhvul.002G136000.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAF3697910.0AF369791.1 Phaseolus vulgaris bZIP transcription factor 3 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007158241.10.0hypothetical protein PHAVU_002G136000g
SwissprotQ501B21e-162BZP16_ARATH; bZIP transcription factor 16
TrEMBLV7CLV60.0V7CLV6_PHAVU; Uncharacterized protein
STRINGXP_007158241.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF40173256
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G35530.11e-140basic region/leucine zipper transcription factor 16
Publications ? help Back to Top
  1. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]