PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Phvul.002G144900.1
Common NamePHAVU_002G144900g
Organism
Phaseolus vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
Family Dof
Protein Properties Length: 345aa    MW: 37051.8 Da    PI: 8.6309
Description Dof family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Phvul.002G144900.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-Dof125.81.4e-393595262
              zf-Dof  2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62
                        +e+ lkcprCds ntkfCyynnysl+qPr+fCk+CrryWtkGGalrnvP+Ggg+rknkk++
  Phvul.002G144900.1 35 QEQGLKCPRCDSPNTKFCYYNNYSLTQPRHFCKTCRRYWTKGGALRNVPIGGGCRKNKKVR 95
                        57899*****************************************************975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
ProDomPD0074781.0E-262493IPR003851Zinc finger, Dof-type
PfamPF027014.5E-333793IPR003851Zinc finger, Dof-type
PROSITE profilePS5088429.4323993IPR003851Zinc finger, Dof-type
PROSITE patternPS0136104177IPR003851Zinc finger, Dof-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010052Biological Processguard cell differentiation
GO:0010118Biological Processstomatal movement
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:1902066Biological Processregulation of cell wall pectin metabolic process
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 345 aa     Download sequence    Send to blast
MSPDDIPPSK PATTATTDQE TQSSGGRKGS STRPQEQGLK CPRCDSPNTK FCYYNNYSLT  60
QPRHFCKTCR RYWTKGGALR NVPIGGGCRK NKKVRSSRLS CDSKDSGSSS SDLVGGLKFL  120
HALPPSMDFH LGGLPFPRLH HHPPATYNQF SSFGDTSSAS SCFNLDPSPG TTPSSFAALN  180
YPFSYNGAIQ GMSAMNVHSG HASSIESLSS INQDLHWKLQ QQRLAMLFGG DNNQKDHSGS  240
GGVSSAANHL ENQTQKPQPI LFQNLEVSKA GIFPVENCRK EHGPSGDTHT PSTEWFFGNS  300
YASVTPTPTA TTTSSGGPRN DNASNWSSGV NAWGDVPQQY TALP*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPhvul.002G144900.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150430.0AP015043.1 Vigna angularis var. angularis DNA, chromosome 10, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007158346.10.0hypothetical protein PHAVU_002G144900g
TrEMBLV7CM550.0V7CM55_PHAVU; Uncharacterized protein
STRINGXP_007158346.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF38543460
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G65590.11e-57Dof family protein