PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Phvul.002G146400.1
Common NamePHAVU_002G146400g
Organism
Phaseolus vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
Family AP2
Protein Properties Length: 504aa    MW: 55023.5 Da    PI: 7.0589
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Phvul.002G146400.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP247.64.3e-15217276155
                 AP2   1 sgykGVrwdkkrgrWvAeIrd.pse.ng..kr.krfslgkfgtaeeAakaaiaarkkleg 55 
                         s y+GV++++++gr++A+++d  +   g  ++ ++++lg ++ +e+Aa+a++ a++k++g
  Phvul.002G146400.1 217 SIYRGVTRHRWTGRYEAHLWDnSCRrEGqaRKgRQVYLGGYDKEEKAARAYDLAALKYWG 276
                         57*******************666664478446*************************98 PP
2AP250.55e-16319370155
                 AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                         s y+GV++++++grW A+I  +     +k  +lg+f t+eeAa+a++ a+ k++g
  Phvul.002G146400.1 319 SIYRGVTRHHQQGRWQARIGRVAG---NKDLYLGTFATEEEAAEAYDIAAIKFRG 370
                         57****************988532...5*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541717.19E-18217286IPR016177DNA-binding domain
CDDcd000181.43E-22217286No hitNo description
PfamPF008476.7E-12217276IPR001471AP2/ERF domain
SMARTSM003804.2E-30218290IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.7E-16218285IPR001471AP2/ERF domain
PROSITE profilePS5103219.44218284IPR001471AP2/ERF domain
PRINTSPR003671.6E-6219230IPR001471AP2/ERF domain
SuperFamilySSF541716.34E-18319379IPR016177DNA-binding domain
PfamPF008472.6E-10319370IPR001471AP2/ERF domain
CDDcd000187.39E-12319378No hitNo description
SMARTSM003806.0E-31320384IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.2E-18320378IPR001471AP2/ERF domain
PROSITE profilePS5103219.164320378IPR001471AP2/ERF domain
PRINTSPR003671.6E-6360380IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010080Biological Processregulation of floral meristem growth
GO:0010492Biological Processmaintenance of shoot apical meristem identity
GO:0035265Biological Processorgan growth
GO:0048364Biological Processroot development
GO:0060772Biological Processleaf phyllotactic patterning
GO:0060774Biological Processauxin mediated signaling pathway involved in phyllotactic patterning
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 504 aa     Download sequence    Send to blast
MARATNWLSF SLSPMEMLRT SEPQYVQYDA ASANNSHHYF LDNLYANGWG NGNLKPQVLM  60
EQNLNQSEVS YVESSHSQSV SHAPPPKLED FLGDSSAVMR YSDSQTETQD SSLTHMYDHH  120
SSAFFGDQQD LKAIAGFQAF STNSGSEVDD SASIGKAQPS EFGTHSIESS GNEFATFSGG  180
ATGNLSLAVA QSSEKAVSAA DSGSSKKVVD TFGQRTSIYR GVTRHRWTGR YEAHLWDNSC  240
RREGQARKGR QVYLGGYDKE EKAARAYDLA ALKYWGPTAT TNFPVSNYSK ELEEMKHVTK  300
QEFIASLRRK SSGFSRGASI YRGVTRHHQQ GRWQARIGRV AGNKDLYLGT FATEEEAAEA  360
YDIAAIKFRG ANAVTNFEMN RYDVDAIMKS SLPVGGAAKR LKLSLESEQK VAVSSNQQNP  420
QCGNGSGSIN FSAIHQPIAS IPCGIPFDSS TAYYHHNLFQ HFHPSNAGTA VSTVTSANAT  480
GLNALPPPAT TAAEFFIWPH QSY*
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00504DAPTransfer from AT5G10510Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapPhvul.002G146400.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150431e-163AP015043.1 Vigna angularis var. angularis DNA, chromosome 10, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007158361.10.0hypothetical protein PHAVU_002G146400g
SwissprotQ52QU20.0AIL6_ARATH; AP2-like ethylene-responsive transcription factor AIL6
TrEMBLV7CM700.0V7CM70_PHAVU; Uncharacterized protein
STRINGXP_007158361.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF48103149
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G10510.20.0AINTEGUMENTA-like 6
Publications ? help Back to Top
  1. Krizek BA
    Intronic sequences are required for AINTEGUMENTA-LIKE6 expression in Arabidopsis flowers.
    BMC Res Notes, 2015. 8: p. 556
    [PMID:26459062]
  2. Yamaguchi N,Jeong CW,Nole-Wilson S,Krizek BA,Wagner D
    AINTEGUMENTA and AINTEGUMENTA-LIKE6/PLETHORA3 Induce LEAFY Expression in Response to Auxin to Promote the Onset of Flower Formation in Arabidopsis.
    Plant Physiol., 2016. 170(1): p. 283-93
    [PMID:26537561]
  3. Krizek BA, et al.
    RNA-Seq Links the Transcription Factors AINTEGUMENTA and AINTEGUMENTA-LIKE6 to Cell Wall Remodeling and Plant Defense Pathways.
    Plant Physiol., 2016. 171(3): p. 2069-84
    [PMID:27208279]
  4. Du Y,Scheres B
    PLETHORA transcription factors orchestrate de novo organ patterning during Arabidopsis lateral root outgrowth.
    Proc. Natl. Acad. Sci. U.S.A., 2017. 114(44): p. 11709-11714
    [PMID:29078398]