PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Phvul.002G148000.1

Common Name

PHAVU_002G148000g

Organism

Phaseolus vulgaris

Taxonomic ID

3885

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus

Family

bHLH

Protein Properties

Length: 222aa MW: 24873 Da PI: 10.8966

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Phvul.002G148000.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	33.8	6.3e-11	47	104	3	54
HHHHHHHHHHHHHHHHHHHHHHCTSCCC.........TTS-STCHHHHHHHHHHHHHH CS HLH 3 rahnerErrRRdriNsafeeLrellPkas......kapskKlsKaeiLekAveYIksL 54 ++h+e+E+rRR riN +e+Lr++lP++ ++ +Ka++L ++++ +k+L Phvul.002G148000.1 47 KKHSEAEKRRRMRINGQYETLRTILPNLIkhgeldCVMNQQKDKASVLAETIKQVKEL 104 68*************************9989999944555567777777777776666 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47459	7.98E-12	37	113	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	14.062	44	104	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	7.53E-8	47	109	No hit	No description
Pfam	PF00010	3.6E-8	47	104	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	5.1E-13	48	115	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	2.9E-7	50	110	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 222 aa Download sequence Send to blast
MQPFRSFYNS EAQMIRGGFP QPFISRTYKT SFLKKRSNAE IKVVAAKKHS EAEKRRRMRI 60 NGQYETLRTI LPNLIKHGEL DCVMNQQKDK ASVLAETIKQ VKELKRKVSK LEQDSCGNSS 120 KDVVKFPSGA DRLNLERCND EEGVVKATLS CEESLGLMSA ISRAVGSVKT KVVKAEIVSV 180 GGRNRSVLWV KGLGKDRMGM LKSSLKIAMH KPAFKMRRST H*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Phvul.002G148000.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AP015043	1e-175	AP015043.1 Vigna angularis var. angularis DNA, chromosome 10, almost complete sequence, cultivar: Shumari.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_007158377.1	1e-163	hypothetical protein PHAVU_002G148000g
TrEMBL	V7CN80	1e-162	V7CN80_PHAVU; Uncharacterized protein
STRING	XP_007158377.1	1e-163	(Phaseolus vulgaris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF12611	30	32

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38070.1	2e-36	bHLH family protein

Link Out ? help Back to Top
Phytozome	Phvul.002G148000.1
Entrez Gene	18637997