PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Phvul.002G148900.1
Common NamePHAVU_002G148900g
Organism
Phaseolus vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
Family ZF-HD
Protein Properties Length: 237aa    MW: 25519.5 Da    PI: 6.9902
Description ZF-HD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Phvul.002G148900.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1ZF-HD_dimer78.96.8e-2545911158
         ZF-HD_dimer 11 kNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRreve 58
                          hA+ +Ggha+DGCgEfm++ g+eg+ +alkCaAC CHRnFHR+e++
  Phvul.002G148900.1 45 NDHAVGIGGHALDGCGEFMAA-GTEGSLDALKCAACSCHRNFHRKESD 91
                        57******************9.999********************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5152321.6374089IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
ProDomPD1257749.0E-184191IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
TIGRFAMsTIGR015661.6E-224589IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PfamPF047702.4E-224590IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
Gene3DG3DSA:1.10.10.606.8E-32160235IPR009057Homeodomain-like
SuperFamilySSF466893.45E-18161234IPR009057Homeodomain-like
TIGRFAMsTIGR015659.9E-26173229IPR006455Homeodomain, ZF-HD class
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 237 aa     Download sequence    Send to blast
MEFEDQEDQE EEQCMSAAAF DPTRMKLPLG PEAVMAAQPV RTSTNDHAVG IGGHALDGCG  60
EFMAAGTEGS LDALKCAACS CHRNFHRKES DGAGASVGGV DPFLVSHHHL HHPPPPQFAA  120
YYRTPTGYLQ VGGQARVTGT LALPSTSGGG GTQSTREDQE DVSNPSAGGT GSKKRFRTKF  180
TQEQKDKMLE LAEKLGWRIQ KHDEGVVQAF CNETGVKRHV LKVWMHNNKH TLGKKP*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wh7_A1e-251742311875ZF-HD homeobox family protein
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPhvul.002G148900.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150430.0AP015043.1 Vigna angularis var. angularis DNA, chromosome 10, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007158386.11e-178hypothetical protein PHAVU_002G148900g
SwissprotA2Z2593e-70ZHD1_ORYSI; Zinc-finger homeodomain protein 1
TrEMBLV7CM971e-176V7CM97_PHAVU; Uncharacterized protein
STRINGXP_007158386.11e-177(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF20634253
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G24660.11e-62homeobox protein 22