PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Phvul.002G163400.1
Common NamePHAVU_002G163400g
Organism
Phaseolus vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
Family WRKY
Protein Properties Length: 347aa    MW: 39204.4 Da    PI: 4.8615
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Phvul.002G163400.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY863.5e-27122181258
                         --SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--SS CS
                WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpkvveitYegeHnh 58 
                         +Dgy+WrKYGqK++  +++prsYYrCt++   gC++kk+v+rs+edp+v++i Y+g+H +
  Phvul.002G163400.1 122 HDGYSWRKYGQKKILTAKHPRSYYRCTFSkttGCWAKKQVQRSEEDPNVFDISYRGSHIC 181
                         7**************************998899*************************87 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5081121.586116179IPR003657WRKY domain
Gene3DG3DSA:2.20.25.806.1E-26116182IPR003657WRKY domain
SuperFamilySSF1182902.88E-23120182IPR003657WRKY domain
SMARTSM007743.0E-35121183IPR003657WRKY domain
PfamPF031068.1E-24123181IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 347 aa     Download sequence    Send to blast
MESGKSCEQK ALMGELIQGL ELATKLNEYL NIPSSVETRD SLLQRILSSF DKALLILTQN  60
APNSNSEEAM QQLTQSLDHE DYEGARKDDQ ELNQNAKKRK SMSKWTEQVR VKIQDGVEEP  120
LHDGYSWRKY GQKKILTAKH PRSYYRCTFS KTTGCWAKKQ VQRSEEDPNV FDISYRGSHI  180
CYKGNGAVPS PKSAEMEEEQ QGCDSDVQFH FAQSSQERLT NYTNTLSAET DNITPHLFPS  240
FECMTQDNNH HTFFPSLEPE NDPFFSTIAQ TSLLSPNTPE SNYFVSPSFT LHDEFDRVFD  300
KPCPDSDAAG IVLADASTTN STIFYFNFSL DALGIGAIFP FNRKCN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6ir8_A1e-15117181468OsWRKY45
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPhvul.002G163400.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007158568.10.0hypothetical protein PHAVU_002G163400g
TrEMBLV7CK380.0V7CK38_PHAVU; Uncharacterized protein
STRINGXP_007158568.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF2851133
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G11070.14e-46WRKY family protein