PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Phvul.002G165500.1
Common NamePHAVU_002G165500g
Organism
Phaseolus vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
Family GRAS
Protein Properties Length: 476aa    MW: 53138.6 Da    PI: 6.1062
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Phvul.002G165500.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS449.81.8e-137494721374
                GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPil 91 
                         l++lL+ cA++v++g+le+a+ lL+++s+laspdgd++qR+aayft+ALa r+++++++l +al++++ +   +s+e+ ++klf+e++P+l
  Phvul.002G165500.1  49 LIHLLIGCANHVANGSLENANMLLEQISQLASPDGDTIQRVAAYFTQALADRILKTWPGLHRALNSTRIA--MVSDEILVQKLFFELFPFL 137
                         689*************************************************************999988..69***************** PP

                GRAS  92 kfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlv 182
                         k+s++++NqaI+ea+ege++vH+iD++++ ++QW+aLl+ L++Rpeg+p+lRiTgv++    +ke l +++++L++ Ae+l++ f+fn+ v
  Phvul.002G165500.1 138 KMSYILTNQAIVEAMEGEKMVHVIDLSATGPAQWIALLRVLSARPEGSPHLRITGVHH----QKEVLDQMAHKLTEEAEKLDIAFQFNP-V 223
                         **********************************************************....9**************************.7 PP

                GRAS 183 akrledleleeLrvkpgEalaVnlvlqlhrll........................................................... 214
                         ++++e+l++++Lrvk+gEala++++lqlh+ll                                                           
  Phvul.002G165500.1 224 VSKIENLDFDKLRVKTGEALAISSILQLHSLLaldddasrrrssnnsnaiqlqkilqmnpntrgdlaekdmvhgyspspdsasasassspg 314
                         99*************************************************************************************9988 PP

                GRAS 215 desvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvvacegaer 305
                         ++s+s++s  +++L+++++lsPk++vv+eq+ +hns+++++r+le+l+ y+alfd+le +++r+s +rik+E++llg+ei+n+vacegaer
  Phvul.002G165500.1 315 SSSASMKS--ESFLNALWGLSPKIMVVTEQDFNHNSSNLMDRLLESLNSYAALFDCLECTVSRASLDRIKIEKMLLGEEIKNIVACEGAER 403
                         77788877..99******************************************************************************* PP

                GRAS 306 rerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                         rerhe++ kW +rl+ +GF +vp+s++ ++qa + l++++ +gyr+ ee+g++v++W+dr+L+sv+aWr
  Phvul.002G165500.1 404 RERHEKMDKWIQRLDLSGFANVPFSSQGVTQAMRFLENYGCNGYRMREENGCAVIYWQDRTLFSVTAWR 472
                         ********************************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098556.06923452IPR005202Transcription factor GRAS
PfamPF035146.3E-13549472IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
Sequence ? help Back to Top
Protein Sequence    Length: 476 aa     Download sequence    Send to blast
MESVFQEEGS SSVTSSPLQF FSMMSLSPGI GSPYPWLREL KSEERGLYLI HLLIGCANHV  60
ANGSLENANM LLEQISQLAS PDGDTIQRVA AYFTQALADR ILKTWPGLHR ALNSTRIAMV  120
SDEILVQKLF FELFPFLKMS YILTNQAIVE AMEGEKMVHV IDLSATGPAQ WIALLRVLSA  180
RPEGSPHLRI TGVHHQKEVL DQMAHKLTEE AEKLDIAFQF NPVVSKIENL DFDKLRVKTG  240
EALAISSILQ LHSLLALDDD ASRRRSSNNS NAIQLQKILQ MNPNTRGDLA EKDMVHGYSP  300
SPDSASASAS SSPGSSSASM KSESFLNALW GLSPKIMVVT EQDFNHNSSN LMDRLLESLN  360
SYAALFDCLE CTVSRASLDR IKIEKMLLGE EIKNIVACEG AERRERHEKM DKWIQRLDLS  420
GFANVPFSSQ GVTQAMRFLE NYGCNGYRMR EENGCAVIYW QDRTLFSVTA WRSRR*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_A3e-58324741380Protein SCARECROW
5b3h_D3e-58324741380Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPhvul.002G165500.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150430.0AP015043.1 Vigna angularis var. angularis DNA, chromosome 10, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007158592.10.0hypothetical protein PHAVU_002G165500g
SwissprotQ9LPR80.0SCL3_ARATH; Scarecrow-like protein 3
TrEMBLV7CNT90.0V7CNT9_PHAVU; Uncharacterized protein
STRINGXP_007158592.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF23833484
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G50420.10.0scarecrow-like 3
Publications ? help Back to Top
  1. Gong X, et al.
    SEUSS Integrates Gibberellin Signaling with Transcriptional Inputs from the SHR-SCR-SCL3 Module to Regulate Middle Cortex Formation in the Arabidopsis Root.
    Plant Physiol., 2016. 170(3): p. 1675-83
    [PMID:26818732]
  2. Lee SA, et al.
    Interplay between ABA and GA Modulates the Timing of Asymmetric Cell Divisions in the Arabidopsis Root Ground Tissue.
    Mol Plant, 2016. 9(6): p. 870-84
    [PMID:26970019]
  3. Choi JW,Lim J
    Control of Asymmetric Cell Divisions during Root Ground Tissue Maturation.
    Mol. Cells, 2016. 39(7): p. 524-9
    [PMID:27306644]