PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Phvul.002G168500.2
Common NamePHAVU_002G168500g
Organism
Phaseolus vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
Family C2H2
Protein Properties Length: 461aa    MW: 51084.3 Da    PI: 9.0816
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Phvul.002G168500.2genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H210.80.0016628123
                        EEETTTTEEESSHHHHHHHHHHT CS
             zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                        y+C++C+k+F+   +L  HirtH
  Phvul.002G168500.2  6 YVCKYCSKRFPCGKSLGGHIRTH 28
                        9**********999999999998 PP
2zf-C2H210.80.0015405427123
                         EEETTTTEEESSHHHHHHHHHHT CS
             zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                         ++Cp+C k F++   L  H r+H
  Phvul.002G168500.2 405 HECPICYKIFRSGQALGGHKRSH 427
                         79******************999 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576677.13E-7232No hitNo description
Gene3DG3DSA:3.30.160.603.7E-5331IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PfamPF139126.4E-7630IPR007087Zinc finger, C2H2
PROSITE profilePS5015711.115633IPR007087Zinc finger, C2H2
SMARTSM003550.078628IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280828IPR007087Zinc finger, C2H2
PROSITE profilePS501579.80695122IPR007087Zinc finger, C2H2
SMARTSM003550.1495117IPR015880Zinc finger, C2H2-like
SuperFamilySSF576673.44E-796117No hitNo description
PfamPF139123.3E-797119IPR007087Zinc finger, C2H2
PROSITE patternPS00028097117IPR007087Zinc finger, C2H2
SuperFamilySSF576673.44E-7400427No hitNo description
PfamPF139124.8E-11405427IPR007087Zinc finger, C2H2
PROSITE profilePS501579.141405427IPR007087Zinc finger, C2H2
SMARTSM003550.28405427IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280407427IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 461 aa     Download sequence    Send to blast
MEERKYVCKY CSKRFPCGKS LGGHIRTHMT EERSNADADM FIKSDGVKKK RDLWCEDVVG  60
NPIYGLRENP KKTMRFVHSG GGAAAAGANY EKEERFCKEC GKGFPSLKAL CGHMACHSDK  120
EKRTIKFEDS DKKLKLVMDS QSDTETCAPS HPRRSKRTRV KTINLSNHPF SSSSPSSSSV  180
VPLANGSSPV SEVEQEQEEV ARCLMLLSRD SSFKGRFASV TEFSDNNSVI LEAKSSSPDT  240
RLGVSNGSRY FKHGPKAKMV DSDVSNDEFK WPKVGDKSSK YTATLVKKLA MEDLDYDRTD  300
GTARKFDSRK RSNYDSLYHN PVGGSSKIAN GFGNEVCGNG TKGWKYELEG ERDYDSYDSI  360
EESHENSSET ESYPAPRSHN SKALNGKKST SKAKKKLKSK KSRDHECPIC YKIFRSGQAL  420
GGHKRSHFIG GSEENTLVIK QAAPVVPCLI DLNLPAPVDE *
Cis-element ? help Back to Top
SourceLink
PlantRegMapPhvul.002G168500.2
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150340.0AP015034.1 Vigna angularis var. angularis DNA, chromosome 1, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007158625.10.0hypothetical protein PHAVU_002G168500g
RefseqXP_007158626.10.0hypothetical protein PHAVU_002G168500g
TrEMBLV7CKF30.0V7CKF3_PHAVU; Uncharacterized protein
STRINGXP_007158625.10.0(Phaseolus vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G26610.15e-54C2H2-like zinc finger protein