PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Phvul.002G170200.1
Common NamePHAVU_002G170200g
Organism
Phaseolus vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
Family NAC
Protein Properties Length: 257aa    MW: 29410.4 Da    PI: 8.2651
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Phvul.002G170200.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM177.73.1e-5591341128
                 NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdke 91 
                         lppGfrFhPtdeel+v+yL++++++k++++ ++i+evd+yk++Pw+Lp k++ +e+ewyfFs+rd+ky++g r+nrat sgyWkatg+dk+
  Phvul.002G170200.1   9 LPPGFRFHPTDEELIVYYLCNQATSKPCPA-SIIPEVDLYKFDPWELPDKTEFGENEWYFFSPRDRKYPNGVRPNRATVSGYWKATGTDKA 98 
                         79****************************.89***************99999************************************** PP

                 NAM  92 vlskkgelvglkktLvfykgrapkgektdWvmheyrl 128
                         ++s +++lvg+kk+Lvfykgr pkg ktdW+mheyrl
  Phvul.002G170200.1  99 IYS-GSKLVGVKKSLVFYKGRPPKGDKTDWIMHEYRL 134
                         ***.9******************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019416.67E-666161IPR003441NAC domain
PROSITE profilePS5100561.5659161IPR003441NAC domain
PfamPF023654.0E-2710134IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 257 aa     Download sequence    Send to blast
MDATTPSELP PGFRFHPTDE ELIVYYLCNQ ATSKPCPASI IPEVDLYKFD PWELPDKTEF  60
GENEWYFFSP RDRKYPNGVR PNRATVSGYW KATGTDKAIY SGSKLVGVKK SLVFYKGRPP  120
KGDKTDWIMH EYRLAESKQP VNRKIGSMRL DDWVLCRIYK KKNTGKTLEH KETHPKVQMT  180
NLIAANNDEQ KMMNLPRTWS LTYLLDMNYL GPILSDGSYC STFDFQISNA NIGIDPFVNS  240
QPVEMANNYV SDSGKY*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A5e-73216610170NO APICAL MERISTEM PROTEIN
1ut4_B5e-73216610170NO APICAL MERISTEM PROTEIN
1ut7_A5e-73216610170NO APICAL MERISTEM PROTEIN
1ut7_B5e-73216610170NO APICAL MERISTEM PROTEIN
3swm_A6e-73216613173NAC domain-containing protein 19
3swm_B6e-73216613173NAC domain-containing protein 19
3swm_C6e-73216613173NAC domain-containing protein 19
3swm_D6e-73216613173NAC domain-containing protein 19
3swp_A6e-73216613173NAC domain-containing protein 19
3swp_B6e-73216613173NAC domain-containing protein 19
3swp_C6e-73216613173NAC domain-containing protein 19
3swp_D6e-73216613173NAC domain-containing protein 19
4dul_A5e-73216610170NAC domain-containing protein 19
4dul_B5e-73216610170NAC domain-containing protein 19
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that binds DNA motifs 5'-CGT[AG](5N)NACG[ACT][AC][AT][ACG][ACT]-3' and 5'-CACG[ACT][AC][AT][AGT][CT]-3' in target genes promoters. Promotes leaf senescence (developmental, light-induced and ABA-induced senescence) and regulates fruit yield and sugar content, probably by establishing abscisic acid (ABA) homeostasis. Activates the expression of senescence and ABA associated genes including NCED1, ABCG40, CYP707A2, SAG113, SGR1 and PAO, by directly binding to their promoters. {ECO:0000269|PubMed:29760199}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPhvul.002G170200.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Accumulates during age-dependent and dark-induced leaf senescence. Induced by abscisic acid (ABA). {ECO:0000269|PubMed:29760199}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAF4026030.0AF402603.1 Phaseolus vulgaris NAC domain protein NAC2 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007158644.10.0hypothetical protein PHAVU_002G170200g
SwissprotK4BNG71e-108NAP2_SOLLC; NAC domain-containing protein 2
TrEMBLQ93XA60.0Q93XA6_PHAVU; NAC domain protein NAC2
STRINGXP_007158644.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF41033262
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69490.11e-110NAC-like, activated by AP3/PI
Publications ? help Back to Top
  1. Tomato Genome Consortium
    The tomato genome sequence provides insights into fleshy fruit evolution.
    Nature, 2012. 485(7400): p. 635-41
    [PMID:22660326]
  2. Ma X, et al.
    The NAC Transcription Factor SlNAP2 Regulates Leaf Senescence and Fruit Yield in Tomato.
    Plant Physiol., 2018. 177(3): p. 1286-1302
    [PMID:29760199]