PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Phvul.002G170600.1

Common Name

PHAVU_002G170600g

Organism

Phaseolus vulgaris

Taxonomic ID

3885

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus

Family

Dof

Protein Properties

Length: 465aa MW: 50325.8 Da PI: 7.6805

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Phvul.002G170600.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	126.3	9.6e-40	122	181	2	61
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkks 61 ++k+l+cprC+s++tkfCyynny+++qPr+fCk+C+ryWt+GG++rnvPvG+grrknk+ Phvul.002G170600.1 122 PDKILPCPRCNSMDTKFCYYNNYNVNQPRHFCKNCQRYWTAGGTMRNVPVGAGRRKNKNI 181 7899*****************************************************986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	2.0E-30	120	179	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	2.8E-32	124	180	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	28.975	126	180	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	128	164	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 465 aa Download sequence Send to blast
MSEVKGSEIK LFGRTISLPH NDSSSPACLS CPSSSSSPQQ ATSATQQRQE DQEPIRKELT 60 SLQDDDASSH QTTEDLKSPA SGILDNPKTP SAETETSLQK SSANGEQSET TSASEDKTPK 120 KPDKILPCPR CNSMDTKFCY YNNYNVNQPR HFCKNCQRYW TAGGTMRNVP VGAGRRKNKN 180 ISAAAASHYR QIMIPEALQG ATLNASNGLH NALLRNRAGV LTFGPDTPLC DTMSSVLSIA 240 ERAQSCVSNG FHGTEPNSCV SYSKEGGHSN GVSVSTTSAS SHTSSHESVD ERVEGFSPQL 300 SYFPGAPWPY PMPRHTVCPP SYPLSFYTTP AYWGCMPPSW NMPCMSPQSS VTNPVSAPIL 360 GKHSRNGNII TPSNSQKEMR GVEHSTSEHN FLIPKTLRID DPGETARSSM WSKLGTKNDR 420 ASSGGLFQAF PPKGNDMNRM VEASPELQAN PAALSRSLTF HEQT*

Sequence ? help Back to Top

Protein Sequence Length: 465 aa Download sequence Send to blast

MSEVKGSEIK LFGRTISLPH NDSSSPACLS CPSSSSSPQQ ATSATQQRQE DQEPIRKELT  60
SLQDDDASSH QTTEDLKSPA SGILDNPKTP SAETETSLQK SSANGEQSET TSASEDKTPK  120
KPDKILPCPR CNSMDTKFCY YNNYNVNQPR HFCKNCQRYW TAGGTMRNVP VGAGRRKNKN  180
ISAAAASHYR QIMIPEALQG ATLNASNGLH NALLRNRAGV LTFGPDTPLC DTMSSVLSIA  240
ERAQSCVSNG FHGTEPNSCV SYSKEGGHSN GVSVSTTSAS SHTSSHESVD ERVEGFSPQL  300
SYFPGAPWPY PMPRHTVCPP SYPLSFYTTP AYWGCMPPSW NMPCMSPQSS VTNPVSAPIL  360
GKHSRNGNII TPSNSQKEMR GVEHSTSEHN FLIPKTLRID DPGETARSSM WSKLGTKNDR  420
ASSGGLFQAF PPKGNDMNRM VEASPELQAN PAALSRSLTF HEQT*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Phvul.002G170600.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AP015034	0.0	AP015034.1 Vigna angularis var. angularis DNA, chromosome 1, almost complete sequence, cultivar: Shumari.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_007158648.1	0.0	hypothetical protein PHAVU_002G170600g
TrEMBL	V7CKF4	0.0	V7CKF4_PHAVU; Uncharacterized protein
STRING	XP_007158648.1	0.0	(Phaseolus vulgaris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF625	34	147

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G39660.2	9e-83	cycling DOF factor 2

Link Out ? help Back to Top
Phytozome	Phvul.002G170600.1
Entrez Gene	18638227