PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Phvul.002G172800.1
Common NamePHAVU_002G172800g
Organism
Phaseolus vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
Family CAMTA
Protein Properties Length: 988aa    MW: 109537 Da    PI: 5.9134
Description CAMTA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Phvul.002G172800.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CG-1181.11.3e-56121291117
                CG-1   1 llke.kkrwlkneeiaaiLenfekheltlelktrpksgsliLynrkkvryfrkDGyswkkkkdgktvrEdhekLKvggvevlycyYahsee 90 
                         l++e ++rwlk+ e++ iL+n+ek+ lt+e++++p+sgsl+L+n++++r+frkDG++w+kk+dg+tv E+he+LKvg+ve+l+cyYah+e+
  Phvul.002G172800.1  12 LHHEaQARWLKPAEVMYILQNHEKFLLTQEPPQQPTSGSLFLFNKRVLRFFRKDGHNWRKKRDGRTVGEAHERLKVGNVEALNCYYAHGEQ 102
                         567779************************************************************************************* PP

                CG-1  91 nptfqrrcywlLeeelekivlvhylev 117
                         np+fqrr+yw+L+ e+e+ivlvhy+++
  Phvul.002G172800.1 103 NPSFQRRSYWMLDPEYEHIVLVHYRNT 129
                         *************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5143782.2449135IPR005559CG-1 DNA-binding domain
SMARTSM010767.7E-7812130IPR005559CG-1 DNA-binding domain
PfamPF038596.9E-4915128IPR005559CG-1 DNA-binding domain
Gene3DG3DSA:2.60.40.101.0E-8424511IPR013783Immunoglobulin-like fold
CDDcd001024.26E-6425510No hitNo description
SuperFamilySSF812962.57E-17425509IPR014756Immunoglobulin E-set
PfamPF018331.2E-6425508IPR002909IPT domain
Gene3DG3DSA:1.25.40.202.8E-15619716IPR020683Ankyrin repeat-containing domain
PROSITE profilePS5029715.035621713IPR020683Ankyrin repeat-containing domain
SuperFamilySSF484038.39E-16624716IPR020683Ankyrin repeat-containing domain
CDDcd002041.15E-12626713No hitNo description
PfamPF127967.7E-7636714IPR020683Ankyrin repeat-containing domain
SMARTSM002480.026654683IPR002110Ankyrin repeat
PROSITE profilePS5008810.606654686IPR002110Ankyrin repeat
SMARTSM002482300693722IPR002110Ankyrin repeat
SMARTSM0001583771793IPR000048IQ motif, EF-hand binding site
PROSITE profilePS500966.65773796IPR000048IQ motif, EF-hand binding site
SuperFamilySSF525401.1E-7774874IPR027417P-loop containing nucleoside triphosphate hydrolase
SMARTSM000150.2826848IPR000048IQ motif, EF-hand binding site
PROSITE profilePS500968.206827856IPR000048IQ motif, EF-hand binding site
PfamPF006120.021829847IPR000048IQ motif, EF-hand binding site
SMARTSM000154.2E-4849871IPR000048IQ motif, EF-hand binding site
PROSITE profilePS500969.359850875IPR000048IQ motif, EF-hand binding site
PfamPF006123.0E-5852871IPR000048IQ motif, EF-hand binding site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0005829Cellular Componentcytosol
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 988 aa     Download sequence    Send to blast
MTPGYEYDIN DLHHEAQARW LKPAEVMYIL QNHEKFLLTQ EPPQQPTSGS LFLFNKRVLR  60
FFRKDGHNWR KKRDGRTVGE AHERLKVGNV EALNCYYAHG EQNPSFQRRS YWMLDPEYEH  120
IVLVHYRNTS EGRLSSGAGA QLSPSSSSAF CQSPSPYSNQ NPGSTSTLVD SYEPNQSFSS  180
SGTTEVTSDI FILSNKMDHM DGTDAESGTS SELVVTQALR RLEVQLSLNE DSFEDIAPFC  240
NKHEAAHDPN LLHNQTVISN QDQSAAFSGS DDQGLFYDEY KGGQGDGGEC YHELIDHGYP  300
DGNEKALWTG VLGSCESSTS VKLPPKNVYL TAGNENSVSF LGRVLVPVSN QEESHWLNFN  360
SDNSQSSVFS PPQGVGEVKF PAYSSMVETR VTNSDYYGTF FDQSQIVAPL DADSSLTIAH  420
KQKFTIKTLS PEWGYATETT KVIIVGSFLC HPSDSTWACM LGDVEVPVQI IHDGVICCEA  480
PPYLPGKVTL CITSGNRESC SEVREFEYRD KTYSCTQCTQ LKTEATRSPE ELLLLVRLGQ  540
MLLSTSTIKN DNIESGIPLI KQKADDDSWS HIIETLLVGG GTSTSTTDWL LEELLKDKLQ  600
QWLSYRSQER DEETDCSLSK KEQGIIHMVA GLGFEWALNP ILSCGVNINF RDISGWTALH  660
WAARFGREKM VASLVASGAS AGAVTDPTAQ DPIGKTAASI AASNGNKGLA GYLSEVAVTS  720
HLSSLVLEES ELSKSSAQLQ ADMTVTSVSK ENLAANEDQA SLKHTLAAVR NVTQAAARIQ  780
SAFRSHSFRK RRAREGINSC GTSVGGIGSI QEISAMSKLA FRSSREHNSA ALSIQKKYRG  840
WKGRKDFLSL RQKVVKIQAH VRGYQVRKHY KVLWAVGILD KVVLRWRRKG AGLRGFRPEM  900
DINENDDEDE DILKVFRKQK VDVEIEKAVS RVMSMVDSPD ARDQYRRMLE KYRQSKAELV  960
AGTSDEVSST TSVGNALFME DDLYPFP*
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that binds to the DNA consensus sequence 5'-[ACG]CGCG[GTC]-3' (By similarity). Regulates transcriptional activity in response to calcium signals (Probable). Binds calmodulin in a calcium-dependent manner (By similarity). Involved together with CAMTA2 and CAMTA3 in the positive regulation of a general stress response (PubMed:25039701). {ECO:0000250|UniProtKB:Q8GSA7, ECO:0000269|PubMed:25039701, ECO:0000305|PubMed:11925432}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPhvul.002G172800.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By heat shock, UVB, salt, wounding, ethylene, methyl jasmonate, abscisic acid, H(2)O(2) and salicylic acid (PubMed:12218065). Induced by cold stress (PubMed:28351986). {ECO:0000269|PubMed:12218065, ECO:0000269|PubMed:28351986}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150340.0AP015034.1 Vigna angularis var. angularis DNA, chromosome 1, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007158673.10.0hypothetical protein PHAVU_002G172800g
SwissprotQ9FYG20.0CMTA4_ARATH; Calmodulin-binding transcription activator 4
TrEMBLV7CKH30.0V7CKH3_PHAVU; Uncharacterized protein
STRINGXP_007158673.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF45482950
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G67310.10.0Calmodulin-binding transcription activator protein with CG-1 and Ankyrin domains
Publications ? help Back to Top
  1. Benn G, et al.
    A key general stress response motif is regulated non-uniformly by CAMTA transcription factors.
    Plant J., 2014. 80(1): p. 82-92
    [PMID:25039701]
  2. Kidokoro S, et al.
    Different Cold-Signaling Pathways Function in the Responses to Rapid and Gradual Decreases in Temperature.
    Plant Cell, 2017. 29(4): p. 760-774
    [PMID:28351986]