PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Phvul.002G182400.2
Common NamePHAVU_002G182400g
Organism
Phaseolus vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
Family C2H2
Protein Properties Length: 246aa    MW: 26470.3 Da    PI: 6.676
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Phvul.002G182400.2genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.20.0002694116123
                         EEETTTTEEESSHHHHHHHHHHT CS
             zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                         ++C++C + F ++  L  H++ H
  Phvul.002G182400.2  94 FSCNYCRRKFYSSQALGGHQNAH 116
                         89*****************9988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.7E-692122No hitNo description
PROSITE profilePS5015711.38594121IPR007087Zinc finger, C2H2
PROSITE patternPS00028096116IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 246 aa     Download sequence    Send to blast
MMTPNLNLEP ENHSEGSSQV ASNVSLHEAS YDLTKGSTTT SSCLTKDETD PGSVTLDLTL  60
NFNSSDSELK GSSDASSEVG AEAPASASAT PRVFSCNYCR RKFYSSQALG GHQNAHKRER  120
TMAKRALRMG MFTERYTSLA SLPLHGSPFR SLGLEAHSAM HQRHVPSSLR TPDMRTAARF  180
ERNHFGSLVF MEDDDVGLFW PGSFRQVDQG AGVNEGHVQS SNASVVPIVP PPPQASASPD  240
LTLKL*
Functional Description ? help Back to Top
Source Description
UniProtActs as negative regulator of abscisic acid (ABA) signaling during germination and early seedling development. {ECO:0000269|PubMed:24808098}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPhvul.002G182400.2
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150340.0AP015034.1 Vigna angularis var. angularis DNA, chromosome 1, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007158792.10.0hypothetical protein PHAVU_002G182400g
RefseqXP_007158793.10.0hypothetical protein PHAVU_002G182400g
RefseqXP_007158794.10.0hypothetical protein PHAVU_002G182400g
RefseqXP_007158795.10.0hypothetical protein PHAVU_002G182400g
SwissprotQ392637e-42ZFP4_ARATH; Zinc finger protein 4
TrEMBLV7CKT00.0V7CKT0_PHAVU; Uncharacterized protein
STRINGXP_007158792.10.0(Phaseolus vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G66140.13e-44zinc finger protein 4
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Joseph MP, et al.
    The Arabidopsis ZINC FINGER PROTEIN3 Interferes with Abscisic Acid and Light Signaling in Seed Germination and Plant Development.
    Plant Physiol., 2014. 165(3): p. 1203-1220
    [PMID:24808098]
  4. Li B, et al.
    Network-Guided Discovery of Extensive Epistasis between Transcription Factors Involved in Aliphatic Glucosinolate Biosynthesis.
    Plant Cell, 2018. 30(1): p. 178-195
    [PMID:29317470]