PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Phvul.002G187900.1
Common NamePHAVU_002G187900g
Organism
Phaseolus vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
Family HD-ZIP
Protein Properties Length: 836aa    MW: 92884.9 Da    PI: 5.966
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Phvul.002G187900.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox35.31.9e-1111462156
                        HSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
            Homeobox 21 knrypsaeereeLAkklgLterqVkvWFqNrRakek 56
                        ++++p++++r+++ ++lgL+ +qVk+WFqN++++ +
  Phvul.002G187900.1 11 ECSHPDETRRRQIGEELGLDAKQVKFWFQNKKTQLR 46
                        5789****************************9876 PP
2START139.53.4e-443515732206
                         HHHHHHHHHHHHHHHC-TT-EEEE....EXCCTTEEEEEEESSS......SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S....EE CS
               START   2 laeeaaqelvkkalaeepgWvkss....esengdevlqkfeeskv.....dsgealrasgvvdmvlallveellddkeqWdetla....ka 79 
                         +a++a++el+k+ + +ep+W++s      ++++d + ++f++s++      ++e +++s+vv m  ++lve +l++  +W   ++    ka
  Phvul.002G187900.1 351 IANTAMEELMKLLSMNEPFWFRSMvderFILQRDCYQRIFQRSNTlngphARVESSKDSRVVKMSGTELVEMFLNSE-KWVYLFPtivkKA 440
                         6899*******************9999889***********9999********************************.77777666666** PP

                         EEEEEECTT......EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--.-TTSEE-EESSEEEEEEEECTCEEE CS
               START  80 etlevissg......galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppesssvvRaellpSgiliepksnghsk 163
                         +t+ev++sg      galqlm+ae+  lsplvp R+f f+Ry++q +ag+w+i dvSvds ++++++ s  R  +lpSg+li++  +g ++
  Phvul.002G187900.1 441 QTIEVLESGslgnrnGALQLMNAEMHILSPLVPtREFHFLRYCKQIEAGVWTIGDVSVDSSTHKTSTVSTTR--RLPSGLLIQEITEGLCR 529
                         ***************************************************************987666666..***************** PP

                         EEEEE-EE--SSXX.HHHHHHHHHHHHHHHHHHHHHHTXXXXXX CS
               START 164 vtwvehvdlkgrlp.hwllrslvksglaegaktwvatlqrqcek 206
                         v wvehv++++++  h l+r l+    a ga +wv +l+r ce+
  Phvul.002G187900.1 530 VSWVEHVEVDDKIQtHDLFRDLICGNNAYGAERWVLALERMCER 573
                         ************999***************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5007111.726148IPR001356Homeobox domain
CDDcd000861.45E-7149No hitNo description
SMARTSM003894.2E-4252IPR001356Homeobox domain
PfamPF000465.5E-91146IPR001356Homeobox domain
SuperFamilySSF466894.6E-81148IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.607.8E-91151IPR009057Homeodomain-like
PROSITE profilePS5084840.31341576IPR002913START domain
SuperFamilySSF559614.51E-25342575No hitNo description
CDDcd088751.18E-90345572No hitNo description
SMARTSM002347.4E-31350573IPR002913START domain
PfamPF018522.8E-37351573IPR002913START domain
Gene3DG3DSA:3.30.530.205.9E-4409537IPR023393START-like domain
SuperFamilySSF559617.97E-12628822No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0008289Molecular Functionlipid binding
Sequence ? help Back to Top
Protein Sequence    Length: 836 aa     Download sequence    Send to blast
RRRKSRDKVD ECSHPDETRR RQIGEELGLD AKQVKFWFQN KKTQLRTKSE RLDIDALRLE  60
NERIQTENRI MSETLKSVAC APCGGRSMGQ EERELSLQIL KVENILLIKE CERVISFMAN  120
NGVDPQLLPA IPSSSSSSSL DTLRASLTVG TSQNPFILND DPHIPSPAQH NIPAVNQHVP  180
TATSTLSQDI PIPIPILNHG HSREIPAPAL VQRVSSLTAT SPAILDPFPS QDDSLLISCL  240
EYNIPALVTA LDQNIHTLAS THNQNNNNVP AAEEQSQLQG PNPCLSVPSV TPTLDQDIPP  300
PCQDISSILQ DHTPSLDLDL DGILKILNSD RASQPTSIEN RDTEKARMLK IANTAMEELM  360
KLLSMNEPFW FRSMVDERFI LQRDCYQRIF QRSNTLNGPH ARVESSKDSR VVKMSGTELV  420
EMFLNSEKWV YLFPTIVKKA QTIEVLESGS LGNRNGALQL MNAEMHILSP LVPTREFHFL  480
RYCKQIEAGV WTIGDVSVDS STHKTSTVST TRRLPSGLLI QEITEGLCRV SWVEHVEVDD  540
KIQTHDLFRD LICGNNAYGA ERWVLALERM CERIASASSE TIPSCEGGGV IRTAESRRNI  600
MRLTRRMVKC YCESLCMKDN TNFPHLTRMN NSGVRVAVRV NMSDPGEPKG MILSAATSFW  660
LPLSPQHVFD YLIDDRKRAK WDVLCSGNSG HEIQRITTGS NPGNCISIMR PFIPKENNIV  720
VLQESYVDAL GCVMLYAPFD MKALNYVMNG DDTSLFPILP SGFTISREGK ANVPEGESGE  780
VGKSGGSLVT LMFQILASSP SRMSMVDIEV VSNVNALVTS TIENIKDALN CLDSK*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPhvul.002G187900.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150340.0AP015034.1 Vigna angularis var. angularis DNA, chromosome 1, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007158859.10.0hypothetical protein PHAVU_002G187900g, partial
TrEMBLV7CNB20.0V7CNB2_PHAVU; Uncharacterized protein (Fragment)
STRINGXP_007158859.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF1737556
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G17920.11e-124homeodomain GLABROUS 12