PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Phvul.002G202000.1
Common NamePHAVU_002G202000g
Organism
Phaseolus vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
Family WRKY
Protein Properties Length: 436aa    MW: 47389.3 Da    PI: 5.6362
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Phvul.002G202000.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY97.87.1e-31234292259
                         --SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
                WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                         +D ++WrKYGqK++kgs++pr+YYrC+s+ gCp++k+vers++dp++++itY++eHnh+
  Phvul.002G202000.1 234 SDLWAWRKYGQKPIKGSPYPRGYYRCSSSkGCPARKQVERSRTDPNLLVITYTSEHNHP 292
                         699************************998****************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.803.4E-31227294IPR003657WRKY domain
PROSITE profilePS5081133.143228294IPR003657WRKY domain
SuperFamilySSF1182901.96E-26231294IPR003657WRKY domain
SMARTSM007744.0E-38233293IPR003657WRKY domain
PfamPF031061.1E-25235292IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 436 aa     Download sequence    Send to blast
MCNILGPIMD NYQGDLSDII RASGASYGSC SMGTSSSKAC APFSLDHFSS VLEGFNSNFG  60
DPFSNTRDPF LHELELPAAS AAYFNSTTSS AEISSSGALE EATCFRDGVA GNSNSCVLKE  120
TILEDDDMRR PCNSILANMI QISPPNDKLP ILSVVDALSR TLKPSGVGLG DNMTNVKKTL  180
EDDCLVGNSN KKEMQISSPQ NPGLKRRKSP AKKSICVPAP AAPNSRQSGE VVPSDLWAWR  240
KYGQKPIKGS PYPRGYYRCS SSKGCPARKQ VERSRTDPNL LVITYTSEHN HPWPTHRNAL  300
AGSSRSQPSS KGNNIGASKN SETSHQNEEE QHEDSNSDSN NVNNSACVQE EKQFETDDGE  360
FSDIGLPYKA ISNVKSYEQL DQGLFAELGK IQKAHSLNLI SPPQGFDDQQ RESNALDSFH  420
SFDWSGDNST KFHLI*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5w3x_B2e-23208295280Disease resistance protein RRS1
5w3x_D2e-23208295280Disease resistance protein RRS1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPhvul.002G202000.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150341e-177AP015034.1 Vigna angularis var. angularis DNA, chromosome 1, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007159024.10.0hypothetical protein PHAVU_002G202000g
TrEMBLV7CNS70.0V7CNS7_PHAVU; Uncharacterized protein
STRINGXP_007159024.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF54303454
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G30650.19e-74WRKY DNA-binding protein 14