PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Phvul.002G202500.1
Common NamePHAVU_002G202500g
Organism
Phaseolus vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
Family WRKY
Protein Properties Length: 487aa    MW: 53644.8 Da    PI: 5.8696
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Phvul.002G202500.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY95.73.3e-30246305159
                         ---SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
                WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                         ++Dg++WrKYGqK  kg+++pr+YYrCt a gCpv+k+v+r+ +d +++++tYeg+Hnh+
  Phvul.002G202500.1 246 MNDGCQWRKYGQKIAKGNPCPRAYYRCTVApGCPVRKQVQRCIDDMSILITTYEGTHNHP 305
                         58***************************99****************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.7E-32231307IPR003657WRKY domain
SuperFamilySSF1182907.06E-28239307IPR003657WRKY domain
PROSITE profilePS5081129.207241307IPR003657WRKY domain
SMARTSM007742.7E-37246306IPR003657WRKY domain
PfamPF031062.5E-27247305IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 487 aa     Download sequence    Send to blast
MGRVQNPTKM EIDLSLKIDT DDEQKAQADE QLKEYNQEEM AQIPDNNNKE EVPETTAGEI  60
EDDASVVETS LQDNTKTKEL SVLQMEMESM KEENKVLRKV VEQTMKDYYD LQMKFSAIQE  120
NNKRKDHEIS LSLQDIATSS GEGPSRILEM VNKKIKSAPS PPNTDDDSLS ESELGLSLRL  180
QPSTSQKESD VGNKEERKDQ QLASFVSVQN KLQRNHELPG ITTHAITPPN RKARVSVRAR  240
CEAATMNDGC QWRKYGQKIA KGNPCPRAYY RCTVAPGCPV RKQVQRCIDD MSILITTYEG  300
THNHPLPVGA TAMASTASAA ASFMLLDSSN PISDGTSSFT QAPLPYTFHS LNPASNFRSI  360
NSSDPSKGVV LDLTSNLSEP LRFSTGSSSN TTTESRFSWM PNKYQGGGAI TMNNNFHKPR  420
PVDIHDRIWK GEESKPLEDN VSAIASDPKF RVAVAAAITS LMNKESHTAT HPIGTSFGPR  480
SGQNGT*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A9e-22233309176WRKY transcription factor 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPhvul.002G202500.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by potassium deprivation. {ECO:0000269|PubMed:15173595}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0968480.0BT096848.1 Soybean clone JCVI-FLGm-15D10 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007159029.10.0hypothetical protein PHAVU_002G202500g
SwissprotQ9C9F08e-81WRKY9_ARATH; Probable WRKY transcription factor 9
TrEMBLV7CNT40.0V7CNT4_PHAVU; Uncharacterized protein
STRINGXP_007159029.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF93203141
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68150.11e-71WRKY DNA-binding protein 9