PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Phvul.002G209300.1
Common NamePHAVU_002G209300g
Organism
Phaseolus vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
Family CAMTA
Protein Properties Length: 1087aa    MW: 121650 Da    PI: 5.8421
Description CAMTA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Phvul.002G209300.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CG-1178.11.1e-55221364118
                CG-1   4 ekkrwlkneeiaaiLenfekheltlelktrpksgsliLynrkkvryfrkDGyswkkkkdgktvrEdhekLKvggvevlycyYahseenptf 94 
                          ++rwl++ ei++iL n++ +++t e+++rp+sgsl+L++rk++ryfrkDG+ w+kkkdgktv+E+hekLKvg+v+vl+cyYah+een++f
  Phvul.002G209300.1  22 AQNRWLRPAEICEILCNYRMFQITPEPPNRPPSGSLFLFDRKVLRYFRKDGHIWRKKKDGKTVKEAHEKLKVGSVDVLHCYYAHGEENESF 112
                         499**************************************************************************************** PP

                CG-1  95 qrrcywlLeeelekivlvhylevk 118
                         qrr+yw+Le ++ +iv+vhyl+vk
  Phvul.002G209300.1 113 QRRSYWMLEPDMMHIVFVHYLDVK 136
                         *********************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5143782.51415141IPR005559CG-1 DNA-binding domain
SMARTSM010761.7E-8018136IPR005559CG-1 DNA-binding domain
PfamPF038592.9E-5021135IPR005559CG-1 DNA-binding domain
Gene3DG3DSA:2.60.40.103.8E-4499588IPR013783Immunoglobulin-like fold
CDDcd001020.00129500588No hitNo description
PfamPF018331.1E-5501586IPR002909IPT domain
SuperFamilySSF812961.01E-15501587IPR014756Immunoglobulin E-set
Gene3DG3DSA:1.25.40.203.6E-18685795IPR020683Ankyrin repeat-containing domain
SuperFamilySSF484032.64E-17689795IPR020683Ankyrin repeat-containing domain
CDDcd002043.60E-13700786No hitNo description
SMARTSM002482800701730IPR002110Ankyrin repeat
PROSITE profilePS5029720.208701809IPR020683Ankyrin repeat-containing domain
PROSITE profilePS500888.576701733IPR002110Ankyrin repeat
PfamPF127962.8E-6706786IPR020683Ankyrin repeat-containing domain
SMARTSM002480.0025734763IPR002110Ankyrin repeat
PROSITE profilePS5008810.98734766IPR002110Ankyrin repeat
SMARTSM000150.29908930IPR000048IQ motif, EF-hand binding site
SuperFamilySSF525401.7E-7909959IPR027417P-loop containing nucleoside triphosphate hydrolase
PROSITE profilePS500968.114909938IPR000048IQ motif, EF-hand binding site
PfamPF006120.0022911929IPR000048IQ motif, EF-hand binding site
SMARTSM000150.0071931953IPR000048IQ motif, EF-hand binding site
PROSITE profilePS500969.285932956IPR000048IQ motif, EF-hand binding site
PfamPF006122.3E-4934953IPR000048IQ motif, EF-hand binding site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009409Biological Processresponse to cold
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0071275Biological Processcellular response to aluminum ion
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 1087 aa     Download sequence    Send to blast
MAEPASYGLG PRLDLQQLQL EAQNRWLRPA EICEILCNYR MFQITPEPPN RPPSGSLFLF  60
DRKVLRYFRK DGHIWRKKKD GKTVKEAHEK LKVGSVDVLH CYYAHGEENE SFQRRSYWML  120
EPDMMHIVFV HYLDVKVNKT NVGGKTYSGE ATSDSQNGSS LSSGFPRNYG SVPSGSTDSM  180
SPTSTLTSLC EDADSEDIHQ ASSGLQSYHE SKSLGPMDKI DACSSSSYLT HPFSGDPAQF  240
PVPGAEYIPF VQGHKSRASD TAYTEGHRAH DIASWNNAME QSSGKHTATS LVSSTSIPTS  300
ASGNILEENN TVPGNLLGRK NALTEEERAS QPIHSNWQIP FEDDTIELPK WSLTQSLGLE  360
FGSDYGTSLL GDVTDTVGPE IVAEMFTFNG ELKEKSVHQN ISKQYTNTQS QPATKSNSEY  420
EVPGEASINY ALTMKRGLLD GEESLKKVDS FSRWITKEFA GVDDLHMQSS PGISWSTDDC  480
GDVIDDTSLN LSLSQDQLFS INDFSPKWAY AESEIEVLIV GTFLKSQPMV TACNWSCMFG  540
EVEVPAEVLA NGILCCQAPP HKIGRVPFYV TRANRFACSE VREFEYREGV DRNVDFADFF  600
NSATEMVLHL RLVGLLSLNS AHTSNQVFED DMEKRNLIFK LISLKEEEEY SCREETTVEM  660
DTTKHKLKEH MFHKQVKETL YSWLLRKVTE TGKGPRVLSE EGQGVLHLVA ALGYDWAIKP  720
IITAGVNINF RDASGWTALH WAAYCGRERT VAVLVSMGAD TKAVTDPCSE AREGRSPADL  780
ASSNGHKGLS GFLAESLLTS QLELLTMEEN KDGRKETSGM KAVQTVSERT ALPVLYGEVP  840
DAICLKDSLN AVRNATQAAD RIHQVYRMQS FQRKQLAQHD DDEFGLSDQQ ALSLLASRTN  900
KSGQGEGLAS AAAIQIQKKF RGWKKRKEFL IIRQRIVKIQ AHVRGHQVRK QYKPIIWSVG  960
ILEKVILRWR RKGSGLRGFR SDTVNKVVPD QPSESLKEDD YDFLKEGRKQ SEARFKKALS  1020
RVKSMVQYPE ARAQYRRVLN VVEDFRQTKG DNMNSMNSEE AVDGVEDLID IDMLLDDENF  1080
LPIAFD*
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that binds to the DNA consensus sequence 5'-[ACG]CGCG[GTC]-3' (By similarity). Regulates transcriptional activity in response to calcium signals (Probable). Binds calmodulin in a calcium-dependent manner (By similarity). Involved in freezing tolerance in association with CAMTA1 and CAMTA3. Contributes together with CAMTA1 and CAMTA3 to the positive regulation of the cold-induced expression of DREB1A/CBF3, DREB1B/CBF1 and DREB1C/CBF2 (PubMed:23581962). Involved together with CAMTA3 and CAMTA4 in the positive regulation of a general stress response (PubMed:25039701). Involved in tolerance to aluminum. Binds to the promoter of ALMT1 transporter and contributes to the positive regulation of aluminum-induced expression of ALMT1 (PubMed:25627216). {ECO:0000250|UniProtKB:Q8GSA7, ECO:0000269|PubMed:23581962, ECO:0000269|PubMed:25039701, ECO:0000269|PubMed:25627216, ECO:0000305|PubMed:11925432}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00043PBMTransfer from AT5G64220Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapPhvul.002G209300.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By salt, wounding, abscisic acid, H(2)O(2) and salicylic acid (PubMed:12218065). Induced by aluminum (PubMed:25627216). {ECO:0000269|PubMed:12218065, ECO:0000269|PubMed:25627216}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150340.0AP015034.1 Vigna angularis var. angularis DNA, chromosome 1, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007159108.10.0hypothetical protein PHAVU_002G209300g
SwissprotQ6NPP40.0CMTA2_ARATH; Calmodulin-binding transcription activator 2
TrEMBLV7CLK60.0V7CLK6_PHAVU; Uncharacterized protein
STRINGXP_007159108.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF74062642
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G64220.20.0Calmodulin-binding transcription activator protein with CG-1 and Ankyrin domains
Publications ? help Back to Top
  1. Benn G, et al.
    A key general stress response motif is regulated non-uniformly by CAMTA transcription factors.
    Plant J., 2014. 80(1): p. 82-92
    [PMID:25039701]
  2. Kidokoro S, et al.
    Different Cold-Signaling Pathways Function in the Responses to Rapid and Gradual Decreases in Temperature.
    Plant Cell, 2017. 29(4): p. 760-774
    [PMID:28351986]