PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Phvul.002G213800.1
Common NamePHAVU_002G213800g
Organism
Phaseolus vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
Family GATA
Protein Properties Length: 361aa    MW: 40369.9 Da    PI: 5.4999
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Phvul.002G213800.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA47.62.2e-15183219135
                GATA   1 CsnCgttk..TplWRrgpdgnktLCnaCGlyyrkkgl 35 
                         C++Cg ++  Tp +Rrgp g+++LCnaCGl+++ kg+
  Phvul.002G213800.1 183 CQHCGISEksTPAMRRGPAGPRSLCNACGLMWANKGT 219
                         *****99999************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM009793.0E-74378IPR010399Tify domain
PROSITE profilePS5132012.8684378IPR010399Tify domain
PfamPF062003.0E-104777IPR010399Tify domain
PROSITE profilePS5101712.828114156IPR010402CCT domain
PfamPF062034.4E-15114155IPR010402CCT domain
PROSITE profilePS501148.669177234IPR000679Zinc finger, GATA-type
SMARTSM004011.8E-11177230IPR000679Zinc finger, GATA-type
SuperFamilySSF577161.09E-11180234No hitNo description
Gene3DG3DSA:3.30.50.101.0E-14181224IPR013088Zinc finger, NHR/GATA-type
CDDcd002025.83E-14182225No hitNo description
PfamPF003202.2E-13183219IPR000679Zinc finger, GATA-type
PROSITE patternPS003440183210IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 361 aa     Download sequence    Send to blast
MDMVNNRCQN GEEPQVDVLS YANGSDEGEE AATCPPVHAS SVLHTRTSEL TISFEGEVYV  60
FPAVTPQKVQ AVLLLLGGQE MPNTVPTSNF LLQQNSQDIR EINDPSRCSK LSRRIASLVR  120
FREKRKERCF EKKIRYSCRK EVAQRMHRKN GQFASLKEDY KSHAENWDSS NGTPDPEYNE  180
RRCQHCGISE KSTPAMRRGP AGPRSLCNAC GLMWANKGTL RDLTKAGRIA FEQNELRSNL  240
NFRIFGSLAE DTSADIKPSK AEAEHSCAKQ DKEGSPHETK PVQMDSRRSP EKTNEQFIVG  300
TAESVTDNLP IQVENHALSL HGQDTTLEDL ADASGTEFEI PAGFDEQVDI DDSNMRTYWL  360
*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPhvul.002G213800.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150345e-45AP015034.1 Vigna angularis var. angularis DNA, chromosome 1, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007159158.10.0hypothetical protein PHAVU_002G213800g
TrEMBLV7CLV00.0V7CLV0_PHAVU; Uncharacterized protein
STRINGXP_007159158.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF33193364
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G21175.11e-55ZIM-like 1