PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Phvul.002G215500.1
Organism
Phaseolus vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
Family MIKC_MADS
Protein Properties Length: 217aa    MW: 24572.3 Da    PI: 9.9818
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Phvul.002G215500.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF83.41.4e-261059251
                        ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
              SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                        ri+n++ rqvtfskRr g+ KKA ELS+LCdaev +i+fsst+kly+y+s
  Phvul.002G215500.1 10 RIDNSTSRQVTFSKRRSGLVKKARELSILCDAEVGLIVFSSTDKLYDYAS 59
                        9***********************************************86 PP
2K-box74.72.5e-25861671798
               K-box  17 lqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkl 98 
                          + e+a L+++++ +q+ +R+++Ge+L+ L +keL +Le++Lekslk +R kK+++l+++++el +k   + +en +L++k+
  Phvul.002G215500.1  86 IKGEVASLRQQVQYMQKCNRQMMGEELSGLGIKELGNLENRLEKSLKGVRVKKDQILIDEVKELHQKGTLAYQENVELHRKI 167
                         6789****************************************************************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004326.0E-39160IPR002100Transcription factor, MADS-box
PROSITE profilePS5006630.796161IPR002100Transcription factor, MADS-box
CDDcd002651.77E-40278No hitNo description
SuperFamilySSF554553.27E-31276IPR002100Transcription factor, MADS-box
PRINTSPR004041.9E-27323IPR002100Transcription factor, MADS-box
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
PfamPF003191.1E-241057IPR002100Transcription factor, MADS-box
PRINTSPR004041.9E-272338IPR002100Transcription factor, MADS-box
PRINTSPR004041.9E-273859IPR002100Transcription factor, MADS-box
PROSITE profilePS5129713.29683173IPR002487Transcription factor, K-box
PfamPF014867.7E-2385167IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 217 aa     Download sequence    Send to blast
MGRGKIVIQR IDNSTSRQVT FSKRRSGLVK KARELSILCD AEVGLIVFSS TDKLYDYASS  60
SLKSVIDRYN KFKEDPHQLM NPALEIKGEV ASLRQQVQYM QKCNRQMMGE ELSGLGIKEL  120
GNLENRLEKS LKGVRVKKDQ ILIDEVKELH QKGTLAYQEN VELHRKINLI REDNEKLQKM  180
IEAKGRKEGA ATSNPLSTIT YGYDIFSPIS LKLSQP*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5f28_A4e-23178177MEF2C
5f28_B4e-23178177MEF2C
5f28_C4e-23178177MEF2C
5f28_D4e-23178177MEF2C
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPhvul.002G215500.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150347e-68AP015034.1 Vigna angularis var. angularis DNA, chromosome 1, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027921414.11e-133MADS-box transcription factor 23-like isoform X1
RefseqXP_027921415.11e-133MADS-box transcription factor 23-like isoform X1
RefseqXP_027921417.11e-133MADS-box transcription factor 23-like isoform X1
SwissprotQ6EP496e-79MAD27_ORYSJ; MADS-box transcription factor 27
TrEMBLA0A4D6L6R61e-132A0A4D6L6R6_VIGUN; MADS-box transcription factor
STRINGGLYMA08G07001.11e-119(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF8912560
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37940.13e-78AGAMOUS-like 21
Publications ? help Back to Top
  1. Puig J, et al.
    Analysis of the expression of the AGL17-like clade of MADS-box transcription factors in rice.
    Gene Expr. Patterns, 2013 Jun-Jul. 13(5-6): p. 160-70
    [PMID:23466806]
  2. Yu C, et al.
    The effects of fluctuations in the nutrient supply on the expression of five members of the AGL17 clade of MADS-box genes in rice.
    PLoS ONE, 2014. 9(8): p. e105597
    [PMID:25140876]