PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Phvul.002G229100.1
Common NamePHAVU_002G229100g
Organism
Phaseolus vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
Family bHLH
Protein Properties Length: 172aa    MW: 19623.1 Da    PI: 8.2193
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Phvul.002G229100.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH35.81.5e-111360655
                        HHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS
                 HLH  6 nerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55
                        + +Er RR+++++ f++L ++lP+ +   + ++ s  +   +A++YIk+Lq
  Phvul.002G229100.1 13 KFVERDRRSQMKDLFSKLNSVLPHqS---SRERISRPDQIGEATDYIKNLQ 60
                        568*********************44...8888*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000832.74E-7564No hitNo description
SuperFamilySSF474597.72E-13672IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088811.344759IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.105.7E-11973IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003533.6E-41365IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000106.0E-81560IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0050832Biological Processdefense response to fungus
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 172 aa     Download sequence    Send to blast
MENNPSSSKS DRKFVERDRR SQMKDLFSKL NSVLPHQSSR ERISRPDQIG EATDYIKNLQ  60
IKLEKMKEKK SNLTDIERSR NDSMNMGVKS SEFKIQQMGS TLEVVLVTGL DCQFIFNETI  120
RILQEEGSDI VNASYTVVEN AVFHTIHCQV DESANGAFRI SEKLKNYVNG R*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPhvul.002G229100.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150341e-120AP015034.1 Vigna angularis var. angularis DNA, chromosome 1, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007159331.11e-124hypothetical protein PHAVU_002G229100g
TrEMBLV7CQ031e-122V7CQ03_PHAVU; Uncharacterized protein
STRINGXP_007159331.11e-123(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF9063498
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G20970.11e-43bHLH family protein