PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Phvul.002G229800.1
Common NamePHAVU_002G229800g
Organism
Phaseolus vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
Family B3
Protein Properties Length: 388aa    MW: 43104.4 Da    PI: 5.5176
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Phvul.002G229800.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B347.43.5e-15170270199
                         EEEE-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEE.TTS-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-S CS
                  B3   1 ffkvltpsdvlksgrlvlpkkfaeeh..ggkkeesktltled.esgrsWevkliy..rkksgryvltkGWkeFvkangLkegDfvvFkldg 86 
                         f k+l++sdv+ +gr+vlpk+ +e+    +  +e+k+++++d  sg  W++k++y  +++s++yvl+ +  + v+  +L+ gD ++++  +
  Phvul.002G229800.1 170 FTKQLKNSDVSVLGRIVLPKREVEAKlpPLTDKEGKDIMVKDvYSGMIWTLKYKYwsNNRSRMYVLE-NAGDLVNHYELQMGDLITIY--E 257
                         89*********************999**55556889******999********99877777779999.9*******************..5 PP

                         SSEE..EEEEE-S CS
                  B3  87 rsefelvvkvfrk 99 
                         +++++l+v +++k
  Phvul.002G229800.1 258 DERKNLYVWARKK 270
                         6888889988876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.101.8E-23164280IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019363.27E-18169274IPR015300DNA-binding pseudobarrel domain
CDDcd100171.39E-18170265No hitNo description
PfamPF023626.4E-11170270IPR003340B3 DNA binding domain
SMARTSM010191.9E-16170271IPR003340B3 DNA binding domain
PROSITE profilePS508639.432170271IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010262Biological Processsomatic embryogenesis
GO:0010344Biological Processseed oilbody biogenesis
GO:0010431Biological Processseed maturation
GO:0010601Biological Processpositive regulation of auxin biosynthetic process
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 388 aa     Download sequence    Send to blast
MDNFPDPVSA TTTNPLILEQ RSMGELNNVN FPVDNSGHVG FPDPYYAPFD QNMQFQQVNQ  60
YPLHTLQTGQ PNAIYGAPNS EVQGWSQQQP EEEEYRKSVG TLTSKVARDK RKQVRQKSKS  120
VPVAPLVPTK GIIKEQPVPG GGSDGKLTIN QDRIFAVFCS PDGKKLEEVF TKQLKNSDVS  180
VLGRIVLPKR EVEAKLPPLT DKEGKDIMVK DVYSGMIWTL KYKYWSNNRS RMYVLENAGD  240
LVNHYELQMG DLITIYEDER KNLYVWARKK RNPEGAVSLS KKEVEDANNL LTSINGGGSS  300
PSGAKLGMNI AERDQLSNIA GNGAPSQTTI EATPPALPAP PALPAPFGGN NQWISDEDVY  360
GGLDNIFEIE NSFHSFDHLK DYKTWPY*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j9c_A8e-371622645107B3 domain-containing transcription factor LEC2
6j9c_D8e-371622645107B3 domain-containing transcription factor LEC2
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00032PBMTransfer from AT1G28300Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapPhvul.002G229800.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150345e-39AP015034.1 Vigna angularis var. angularis DNA, chromosome 1, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007159339.10.0hypothetical protein PHAVU_002G229800g
TrEMBLV7CPP80.0V7CPP8_PHAVU; Uncharacterized protein
STRINGXP_007159339.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF123482127
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G28300.12e-36B3 family protein