PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Phvul.002G229800.2
Common NamePHAVU_002G229800g
Organism
Phaseolus vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
Family B3
Protein Properties Length: 387aa    MW: 42976.2 Da    PI: 5.3147
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Phvul.002G229800.2genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B347.43.5e-15169269199
                         EEEE-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEE.TTS-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-S CS
                  B3   1 ffkvltpsdvlksgrlvlpkkfaeeh..ggkkeesktltled.esgrsWevkliy..rkksgryvltkGWkeFvkangLkegDfvvFkldg 86 
                         f k+l++sdv+ +gr+vlpk+ +e+    +  +e+k+++++d  sg  W++k++y  +++s++yvl+ +  + v+  +L+ gD ++++  +
  Phvul.002G229800.2 169 FTKQLKNSDVSVLGRIVLPKREVEAKlpPLTDKEGKDIMVKDvYSGMIWTLKYKYwsNNRSRMYVLE-NAGDLVNHYELQMGDLITIY--E 256
                         89*********************999**55556889******999********99877777779999.9*******************..5 PP

                         SSEE..EEEEE-S CS
                  B3  87 rsefelvvkvfrk 99 
                         +++++l+v +++k
  Phvul.002G229800.2 257 DERKNLYVWARKK 269
                         6888889988876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.103.4E-23166279IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019363.27E-18168273IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS508639.432169270IPR003340B3 DNA binding domain
SMARTSM010191.9E-16169270IPR003340B3 DNA binding domain
CDDcd100171.38E-18169264No hitNo description
PfamPF023626.3E-11169269IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010262Biological Processsomatic embryogenesis
GO:0010344Biological Processseed oilbody biogenesis
GO:0010431Biological Processseed maturation
GO:0010601Biological Processpositive regulation of auxin biosynthetic process
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 387 aa     Download sequence    Send to blast
MDNFPDPVSA TTTNPLILEQ RSMGELNNVN FPVDNSGHVG FPDPYYAPFD QNMQFQQVNQ  60
YPLHTLQTGQ PNAIYGAPNS EVQGWSQQQP EEEEYRKSVG TLTSKVARDK RKQVRQKSKS  120
VPVAPLVPTK GIIKEQPVPG GGSDGKLTIN QDRIFAVFCS PDGKLEEVFT KQLKNSDVSV  180
LGRIVLPKRE VEAKLPPLTD KEGKDIMVKD VYSGMIWTLK YKYWSNNRSR MYVLENAGDL  240
VNHYELQMGD LITIYEDERK NLYVWARKKR NPEGAVSLSK KEVEDANNLL TSINGGGSSP  300
SGAKLGMNIA ERDQLSNIAG NGAPSQTTIE ATPPALPAPP ALPAPFGGNN QWISDEDVYG  360
GLDNIFEIEN SFHSFDHLKD YKTWPY*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j9c_A2e-351642638107B3 domain-containing transcription factor LEC2
6j9c_D2e-351642638107B3 domain-containing transcription factor LEC2
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00032PBMTransfer from AT1G28300Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapPhvul.002G229800.2
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150345e-39AP015034.1 Vigna angularis var. angularis DNA, chromosome 1, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007159338.10.0hypothetical protein PHAVU_002G229800g
TrEMBLV7CMB30.0V7CMB3_PHAVU; Uncharacterized protein
STRINGXP_007159339.10.0(Phaseolus vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G28300.15e-35B3 family protein