PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Phvul.002G230100.1

Common Name

PHAVU_002G230100g

Organism

Phaseolus vulgaris

Taxonomic ID

3885

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus

Family

Dof

Protein Properties

Length: 262aa MW: 27963.3 Da PI: 10.1343

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Phvul.002G230100.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	118.2	3.3e-37	21	79	3	61
zf-Dof 3 ekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkks 61 + + kcprCdstntkfCy+nnyslsqPr+fCk+C+ryWt+GG++rn+PvGg++rk k+ Phvul.002G230100.1 21 KPQHKCPRCDSTNTKFCYFNNYSLSQPRHFCKTCKRYWTHGGTFRNIPVGGASRKAKRG 79 6789***************************************************9975 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	6.0E-24	14	78	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	4.2E-32	23	78	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	28.127	24	78	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	26	62	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 262 aa Download sequence Send to blast
MEQEEGREEN TKIQLAVAAP KPQHKCPRCD STNTKFCYFN NYSLSQPRHF CKTCKRYWTH 60 GGTFRNIPVG GASRKAKRGK TDSSSPSHSL TQPLSNLMKP SPLTMLHSTS PYYHQLGGGG 120 GGGRGYLSSL ATLHSQSLNV AGSPSSLPLL SGFNAASSFP LRFHHMGTRE RVESLYPAPQ 180 RLLASNMASG TAASPSAHCP QSLINNVSST NLTAGSDASL WSATINATSI GGNSDQNNVK 240 GGPSSLIPNH WLHLSGYRPP Q*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Phvul.002G230100.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AP015034	7e-93	AP015034.1 Vigna angularis var. angularis DNA, chromosome 1, almost complete sequence, cultivar: Shumari.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_007159342.1	0.0	hypothetical protein PHAVU_002G230100g
TrEMBL	V7CQX8	0.0	V7CQX8_PHAVU; Uncharacterized protein
STRING	XP_007159342.1	0.0	(Phaseolus vulgaris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF4145	32	58

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G66940.1	8e-33	Dof family protein

Link Out ? help Back to Top
Phytozome	Phvul.002G230100.1
Entrez Gene	18638843