PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Phvul.002G230200.1

Common Name

PHAVU_002G230200g

Organism

Phaseolus vulgaris

Taxonomic ID

3885

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus

Family

Dof

Protein Properties

Length: 348aa MW: 37110.1 Da PI: 8.9542

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Phvul.002G230200.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	125.4	1.8e-39	45	105	2	62
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 +++alkcprCds+ntkfCyynnyslsqPr+fCkaC+ryWt+GG+lrnvPvGgg+rknk+++ Phvul.002G230200.1 45 QQQALKCPRCDSSNTKFCYYNNYSLSQPRHFCKACKRYWTRGGTLRNVPVGGGCRKNKRVK 105 7899******************************************************976 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF02701	9.5E-34	47	103	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	29.525	49	103	IPR003851	Zinc finger, Dof-type
ProDom	PD007478	3.0E-26	50	103	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	51	87	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 348 aa Download sequence Send to blast
MVVVTPPTAS NKWTQLSSLA SQIDDRKASM GRVMEKPTQD LLQQQQQALK CPRCDSSNTK 60 FCYYNNYSLS QPRHFCKACK RYWTRGGTLR NVPVGGGCRK NKRVKRPNGD ASANSPPSSS 120 TPSSNSNPPS RPHIPSSSTA NHVNVNPLFY GLPNSNGCDV MDVPFPRFNL QSQLNALGLG 180 FSSGVNVISS EPSDNGFSTT TTTSNTNNFL SAYNSIFGSS SSSTCAPSTP VMASLLSSTL 240 LQQKFIGGAG VKGHHDGNGF QGFAPLQGLQ MEGSNNISSK EVKAEGPNRL ELEWSNNNNN 300 NGGGGACQNQ MEHVGLSDPN SLYWNTATGL SAWSDQPNFG PSVTSLI*

Sequence ? help Back to Top

Protein Sequence Length: 348 aa Download sequence Send to blast

MVVVTPPTAS NKWTQLSSLA SQIDDRKASM GRVMEKPTQD LLQQQQQALK CPRCDSSNTK  60
FCYYNNYSLS QPRHFCKACK RYWTRGGTLR NVPVGGGCRK NKRVKRPNGD ASANSPPSSS  120
TPSSNSNPPS RPHIPSSSTA NHVNVNPLFY GLPNSNGCDV MDVPFPRFNL QSQLNALGLG  180
FSSGVNVISS EPSDNGFSTT TTTSNTNNFL SAYNSIFGSS SSSTCAPSTP VMASLLSSTL  240
LQQKFIGGAG VKGHHDGNGF QGFAPLQGLQ MEGSNNISSK EVKAEGPNRL ELEWSNNNNN  300
NGGGGACQNQ MEHVGLSDPN SLYWNTATGL SAWSDQPNFG PSVTSLI*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Phvul.002G230200.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AP015034	0.0	AP015034.1 Vigna angularis var. angularis DNA, chromosome 1, almost complete sequence, cultivar: Shumari.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_007159343.1	0.0	hypothetical protein PHAVU_002G230200g
TrEMBL	V7CMB7	0.0	V7CMB7_PHAVU; Uncharacterized protein
STRING	XP_007159343.1	0.0	(Phaseolus vulgaris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF4522	33	56

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G28310.1	7e-36	Dof family protein

Link Out ? help Back to Top
Phytozome	Phvul.002G230200.1
Entrez Gene	18638844