PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Phvul.002G230300.1
Common NamePHAVU_002G230300g
Organism
Phaseolus vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
Family SBP
Protein Properties Length: 225aa    MW: 26235 Da    PI: 5.6812
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Phvul.002G230300.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP74.81.5e-23119166249
                         -SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSE CS
                 SBP   2 CqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrf 49 
                         Cqv++C+adlseak+yhrrhkvCe h+k  +vl++gl+qrfCqqCsr 
  Phvul.002G230300.1 119 CQVDNCDADLSEAKQYHRRHKVCEYHAKVHSVLMAGLQQRFCQQCSRL 166
                         ***********************************************6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1100.103.6E-25112166IPR004333Transcription factor, SBP-box
PROSITE profilePS5114118.64116195IPR004333Transcription factor, SBP-box
SuperFamilySSF1036121.44E-22117169IPR004333Transcription factor, SBP-box
PfamPF031102.3E-18119166IPR004333Transcription factor, SBP-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0016021Cellular Componentintegral component of membrane
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 225 aa     Download sequence    Send to blast
METKRRPYVV LTNFSHILFT LLVFTIYIKY LWSSLPYVTP ESFFLTTFFW ISEEFMDASR  60
SEGKRVLRYN EEEEEDEEEE EEEEVETGFG EEGRRNKRVM TDLYGKKGSK AGGSMPPSCQ  120
VDNCDADLSE AKQYHRRHKV CEYHAKVHSV LMAGLQQRFC QQCSRLIFAV TCLREKDSMS  180
CLNLMNQKGV VEHDWLAIMR GVAKMQLIVV ENNFFYVTMN INKP*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ul4_A6e-19111166358squamosa promoter binding protein-like 4
1wj0_A2e-19119166653squamosa promoter-binding protein-like 12
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPhvul.002G230300.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150340.0AP015034.1 Vigna angularis var. angularis DNA, chromosome 1, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007159344.11e-169hypothetical protein PHAVU_002G230300g
TrEMBLV7CPQ31e-168V7CPQ3_PHAVU; Uncharacterized protein
STRINGXP_007159344.11e-169(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF2269134
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G02065.21e-21squamosa promoter binding protein-like 8