PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Phvul.002G238400.1

Common Name

PHAVU_002G238400g

Organism

Phaseolus vulgaris

Taxonomic ID

3885

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus

Family

Dof

Protein Properties

Length: 184aa MW: 20989.5 Da PI: 7.9356

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Phvul.002G238400.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	123.1	9.7e-39	43	100	3	60
zf-Dof 3 ekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkk 60 e++++cprC+s++tkfCy+nny+++qPr+fCk+C+ryWt+GGalrnvP+G+grrk k Phvul.002G238400.1 43 ERIIPCPRCKSMETKFCYFNNYNVNQPRHFCKGCQRYWTAGGALRNVPIGAGRRKAKP 100 67899**************************************************986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	8.0E-29	41	99	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	1.1E-31	45	99	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	28.155	46	100	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	48	84	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0010214	Biological Process	seed coat development
GO:0044212	Molecular Function	transcription regulatory region DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 184 aa Download sequence Send to blast
MAQVESGQAS EGIKLFGTTI TLHGRERRED NKVSEDETEK RAERIIPCPR CKSMETKFCY 60 FNNYNVNQPR HFCKGCQRYW TAGGALRNVP IGAGRRKAKP PSHDPTAFLD ASTVQQQFAL 120 EEWDVATITH GDFRHFFPSK RRRINSAEHE SQNEFVMSHE IIEHPNEIET KEALKGSDNV 180 KLI*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	139	143	KRRRI

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that binds specifically to a 5'-AA[AG]G-3' consensus core sequence. Acts as a negative regulator in the phytochrome-mediated light responses. Controls phyB-mediated end-of-day response and the phyA-mediated anthocyanin accumulation. Not involved in direct flowering time regulation. {ECO:0000269\|PubMed:19619493}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00166	DAP	Transfer from AT1G29160	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Phvul.002G238400.1

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By red or far-red light. Circadian-regulation. The transcript level rises progressively from dawn and decreases during the night. {ECO:0000269\|PubMed:19619493}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AP015034	1e-126	AP015034.1 Vigna angularis var. angularis DNA, chromosome 1, almost complete sequence, cultivar: Shumari.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_007159448.1	1e-137	hypothetical protein PHAVU_002G238400g
Swissprot	P68350	4e-53	DOF15_ARATH; Dof zinc finger protein DOF1.5
TrEMBL	V7CML4	1e-136	V7CML4_PHAVU; Uncharacterized protein
STRING	XP_007159448.1	1e-136	(Phaseolus vulgaris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF6483	32	51

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G29160.1	1e-55	Dof family protein

Link Out ? help Back to Top
Phytozome	Phvul.002G238400.1
Entrez Gene	18638926

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Bueso E, et al. Arabidopsis COGWHEEL1 links light perception and gibberellins with seed tolerance to deterioration. Plant J., 2016. 87(6): p. 583-96 [PMID:27227784]