PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Phvul.002G243200.1
Common NamePHAVU_002G243200g
Organism
Phaseolus vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
Family MIKC_MADS
Protein Properties Length: 243aa    MW: 27475.9 Da    PI: 10.1013
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Phvul.002G243200.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF95.81.9e-302574150
                        S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS
              SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50
                        krien++ rqvtf+kRrng+lKKA+ELSvLCdaeva+i+fs++g+lyey+
  Phvul.002G243200.1 25 KRIENTTSRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSNRGRLYEYA 74
                        79***********************************************8 PP
2K-box112.54.2e-37911892100
               K-box   2 qkssgksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenk 92 
                         ++ssg s++ea+a+ +qqe+akL+ +i+nLq+ +R+++Ge L++++ k+L++Le++Lek++++iRskKnell+++ie++qk+e +l+++n+
  Phvul.002G243200.1  91 DSSSGGSASEANAQFYQQEAAKLRVQISNLQNHNRQMMGEALSNMNAKDLKNLETKLEKGISRIRSKKNELLFAEIEYMQKRETDLHNNNQ 181
                         56778889*********************************************************************************** PP

               K-box  93 aLrkklee 100
                          Lr+k++e
  Phvul.002G243200.1 182 LLRAKMAE 189
                         *****986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004322.3E-401776IPR002100Transcription factor, MADS-box
PROSITE profilePS5006632.9691777IPR002100Transcription factor, MADS-box
CDDcd002659.01E-431887No hitNo description
SuperFamilySSF554552.09E-321890IPR002100Transcription factor, MADS-box
PROSITE patternPS0035001973IPR002100Transcription factor, MADS-box
PRINTSPR004042.6E-321939IPR002100Transcription factor, MADS-box
PfamPF003192.0E-262673IPR002100Transcription factor, MADS-box
PRINTSPR004042.6E-323954IPR002100Transcription factor, MADS-box
PRINTSPR004042.6E-325475IPR002100Transcription factor, MADS-box
PfamPF014862.7E-27100187IPR002487Transcription factor, K-box
PROSITE profilePS5129714.927103193IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 243 aa     Download sequence    Send to blast
MAFPNQSVSS VSPERKTGRG KIEIKRIENT TSRQVTFCKR RNGLLKKAYE LSVLCDAEVA  60
LIVFSNRGRL YEYANNSVKA SIERYKKASS DSSSGGSASE ANAQFYQQEA AKLRVQISNL  120
QNHNRQMMGE ALSNMNAKDL KNLETKLEKG ISRIRSKKNE LLFAEIEYMQ KRETDLHNNN  180
QLLRAKMAER ERGEHNVNVL SGSTSYESMQ SQFDSRGFFQ VTGLQPNNNQ YAGQDHMSLQ  240
FV*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1tqe_P3e-191894278Myocyte-specific enhancer factor 2B
1tqe_Q3e-191894278Myocyte-specific enhancer factor 2B
1tqe_R3e-191894278Myocyte-specific enhancer factor 2B
1tqe_S3e-191894278Myocyte-specific enhancer factor 2B
6c9l_A3e-191894278Myocyte-specific enhancer factor 2B
6c9l_B3e-191894278Myocyte-specific enhancer factor 2B
6c9l_C3e-191894278Myocyte-specific enhancer factor 2B
6c9l_D3e-191894278Myocyte-specific enhancer factor 2B
6c9l_E3e-191894278Myocyte-specific enhancer factor 2B
6c9l_F3e-191894278Myocyte-specific enhancer factor 2B
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in regulating genes that determines stamen and carpel development in wild-type flowers. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPhvul.002G243200.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0934340.0BT093434.1 Soybean clone JCVI-FLGm-14I9 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007159503.11e-179hypothetical protein PHAVU_002G243200g
SwissprotQ435851e-121AG_TOBAC; Floral homeotic protein AGAMOUS
TrEMBLV7CMQ91e-178V7CMQ9_PHAVU; Uncharacterized protein
STRINGXP_007159503.11e-178(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF68429102
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G18960.11e-111MIKC_MADS family protein
Publications ? help Back to Top
  1. Cheung AY,Zhan XY,Wang H,Wu HM
    Organ-specific and Agamous-regulated expression and glycosylation of a pollen tube growth-promoting protein.
    Proc. Natl. Acad. Sci. U.S.A., 1996. 93(9): p. 3853-8
    [PMID:8632979]