PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Phvul.002G250800.1
Common NamePHAVU_002G250800g
Organism
Phaseolus vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
Family GATA
Protein Properties Length: 142aa    MW: 16211.9 Da    PI: 9.6338
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Phvul.002G250800.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA51.71.2e-16842135
                GATA  1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35
                        C +Cg   TplWR+gp+ ++ LCnaCG +y+k+g+
  Phvul.002G250800.1  8 CFHCGIDVTPLWRNGPEDKPVLCNACGSRYKKRGS 42
                        ****************88888***********997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004017.8E-9254IPR000679Zinc finger, GATA-type
CDDcd002022.40E-13741No hitNo description
SuperFamilySSF577162.52E-12751No hitNo description
Gene3DG3DSA:3.30.50.104.6E-14841IPR013088Zinc finger, NHR/GATA-type
PfamPF003202.4E-14842IPR000679Zinc finger, GATA-type
PROSITE profilePS5011411.266841IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 142 aa     Download sequence    Send to blast
MGKKLGPCFH CGIDVTPLWR NGPEDKPVLC NACGSRYKKR GSLGLEDYLP KNFQPQYFGK  60
YKDLKVDKSA HLWSTKIPTR KRSEVVYKEI TPLERFHIRL LQMSKNYRNP TESPSEEVLL  120
LNNVNNFIPC NEIGIGCVIL K*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPhvul.002G250800.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150342e-70AP015034.1 Vigna angularis var. angularis DNA, chromosome 1, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007159598.11e-101hypothetical protein PHAVU_002G250800g
TrEMBLV7CN031e-100V7CN03_PHAVU; Uncharacterized protein
STRINGXP_007159598.11e-101(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF127471024
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G47140.13e-18GATA transcription factor 27