PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Phvul.002G265400.1
Common NamePHAVU_002G265400g
Organism
Phaseolus vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
Family WRKY
Protein Properties Length: 188aa    MW: 21265.3 Da    PI: 7.4133
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Phvul.002G265400.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY919.7e-29107165159
                         ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
                WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                         +dDgy+WrKYG+K+vk++++ r+YY+C+s gC+vkk+ver++ed ++v++tYeg Hnhe
  Phvul.002G265400.1 107 MDDGYKWRKYGKKSVKSNPNLRNYYKCSSGGCSVKKRVERDREDSSYVITTYEGVHNHE 165
                         59********************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.805.1E-3294167IPR003657WRKY domain
SuperFamilySSF1182901.7E-2699167IPR003657WRKY domain
PROSITE profilePS5081130.389102167IPR003657WRKY domain
SMARTSM007741.4E-31107166IPR003657WRKY domain
PfamPF031061.2E-22108165IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 188 aa     Download sequence    Send to blast
MDFFYFGNPH PSHDHLHNMP PSSPEIALSD YLLLDDFLDH HHGHSPSSQS TESSEKTTFT  60
DATHGFTTGA TSKNNNNNIK CKNEISESKA RLGPRIAFRT KSELEIMDDG YKWRKYGKKS  120
VKSNPNLRNY YKCSSGGCSV KKRVERDRED SSYVITTYEG VHNHESPFTT YYSPISFLHS  180
DDSTSSK*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A2e-2497167777Probable WRKY transcription factor 4
2lex_A2e-2497167777Probable WRKY transcription factor 4
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). Involved in defense responses. May act as positive regulator of salicylic acid (SA)-mediated signaling and negative regulator of jasmonic acid (JA)-mediated signaling (PubMed:21030507). {ECO:0000250, ECO:0000269|PubMed:21030507}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPhvul.002G265400.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007159765.11e-137hypothetical protein PHAVU_002G265400g
SwissprotQ93WU99e-40WRK51_ARATH; Probable WRKY transcription factor 51
TrEMBLV7CNQ71e-136V7CNQ7_PHAVU; Uncharacterized protein
STRINGXP_007159765.11e-137(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF112034110
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G64810.15e-42WRKY DNA-binding protein 51
Publications ? help Back to Top
  1. Yan C, et al.
    Injury Activates Ca2+/Calmodulin-Dependent Phosphorylation of JAV1-JAZ8-WRKY51 Complex for Jasmonate Biosynthesis.
    Mol. Cell, 2018. 70(1): p. 136-149.e7
    [PMID:29625034]