PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Phvul.002G266400.1
Common NamePHAVU_002G266400g
Organism
Phaseolus vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
Family WRKY
Protein Properties Length: 230aa    MW: 26058.3 Da    PI: 9.2294
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Phvul.002G266400.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY102.52.5e-32152210159
                         ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
                WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                         ldDgy+WrKYGqK+vk++++prsYYrCt+ +C+vkk+ver aedp++v++tYeg+H h+
  Phvul.002G266400.1 152 LDDGYKWRKYGQKVVKNTQHPRSYYRCTQDNCRVKKRVERLAEDPRMVITTYEGRHVHS 210
                         59********************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.2E-33137210IPR003657WRKY domain
SuperFamilySSF1182901.01E-28144211IPR003657WRKY domain
PROSITE profilePS5081129.356147212IPR003657WRKY domain
SMARTSM007749.8E-37152211IPR003657WRKY domain
PfamPF031063.4E-25153209IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 230 aa     Download sequence    Send to blast
MSTTSHTIAH HSLFEEQDQI PTQMGFFPFP TNLTLPPLGC HQSSLKAFSS ITPSSLAISQ  60
QDSTSNLTET LFQKSREDLT SGFGGAQFLS LHRSSVNPWA LGEVTDCFSS KRSGFDDHHL  120
GISAMKMKKM KARRKVREPR FCFKTMSDVD VLDDGYKWRK YGQKVVKNTQ HPRSYYRCTQ  180
DNCRVKKRVE RLAEDPRMVI TTYEGRHVHS PSNDLEDSSS ASQLGNFLW*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A6e-27143209874Probable WRKY transcription factor 4
2lex_A6e-27143209874Probable WRKY transcription factor 4
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPhvul.002G266400.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0909140.0BT090914.1 Soybean clone JCVI-FLGm-5N5 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007159778.11e-173hypothetical protein PHAVU_002G266400g
TrEMBLV7CNJ41e-172V7CNJ4_PHAVU; Uncharacterized protein
STRINGXP_007159778.11e-173(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF40793361
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G39410.15e-55WRKY DNA-binding protein 13