PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Phvul.002G269900.1
Common NamePHAVU_002G269900g
Organism
Phaseolus vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
Family MYB_related
Protein Properties Length: 305aa    MW: 33113.8 Da    PI: 7.5217
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Phvul.002G269900.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding22.42.9e-07247291446
                         S-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHHH CS
     Myb_DNA-binding   4 WTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwqk 46 
                         W+  Ed  l++a k ++++   +W+++a+ ++ gR+   c  r+  
  Phvul.002G269900.1 247 WSSGEDVALLNALKAFPKDismRWEKVAAAVP-GRSKAACMRRFAE 291
                         ********************************.********99865 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500905.088148189IPR017877Myb-like domain
SMARTSM007170.058152205IPR001005SANT/Myb domain
SuperFamilySSF466896.79E-6154192IPR009057Homeodomain-like
PROSITE profilePS500907.282239293IPR017877Myb-like domain
SMARTSM007178.5E-4243295IPR001005SANT/Myb domain
SuperFamilySSF466892.89E-10244293IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.607.4E-6244292IPR009057Homeodomain-like
PfamPF002491.8E-6246291IPR001005SANT/Myb domain
CDDcd001675.65E-6247293No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0048767Biological Processroot hair elongation
GO:0005783Cellular Componentendoplasmic reticulum
GO:0005886Cellular Componentplasma membrane
GO:0016021Cellular Componentintegral component of membrane
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 305 aa     Download sequence    Send to blast
MEFLDEDARP RFVFQSGAAA STEPTHPNQK PTKPFLFVTV SLSSLFLALS LFFLESEPFK  60
SLLFWLALSL LIGPFAPPSL TGGDVRVGLG EVVNFPDPEP ETDDDARKPP QRRSRQRRPE  120
EVAAIGPVVS VGAAEKRGGG GGGVEKVSTV VEEKEWSEED VEVLKKQLIK NPVGMPGRWE  180
AIAAAFAGRH GVESVIKKAK ESGEKKVDDS ESYAMFLKKR KALDKRVVEE NGGEDSVTVE  240
KAVENGWSSG EDVALLNALK AFPKDISMRW EKVAAAVPGR SKAACMRRFA ELKKGFRSSK  300
AAAE*
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor involved in the regulation of root hair development, possibly through auxin signaling. Its endoplasmic reticulum membrane localization is not compatible with its transcription factor activity in the nucleus. May be cleaved to target the nucleus. {ECO:0000269|PubMed:21477080}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPhvul.002G269900.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by auxin. {ECO:0000269|PubMed:21477080}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150340.0AP015034.1 Vigna angularis var. angularis DNA, chromosome 1, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007159816.10.0hypothetical protein PHAVU_002G269900g
SwissprotQ9ASQ27e-80MAMYB_ARATH; Transcription factor MAMYB
TrEMBLV7CRB70.0V7CRB7_PHAVU; Uncharacterized protein
STRINGXP_007159816.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF106861418
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G45420.11e-56MYB_related family protein