PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Phvul.002G290000.1
Common NamePHAVU_002G290000g
Organism
Phaseolus vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
Family bHLH
Protein Properties Length: 628aa    MW: 70902 Da    PI: 6.5199
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Phvul.002G290000.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH47.14.2e-15429475455
                         HHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS
                 HLH   4 ahnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 
                         +h + ErrRR+++N++f +Lr+++P+ +      K +K++iL  A+eY+k+L+
  Phvul.002G290000.1 429 NHVMSERRRRAKLNERFLTLRSMVPSiS------KDDKVSILDDAIEYLKKLE 475
                         799***********************66......****************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF142159.0E-547190IPR025610Transcription factor MYC/MYB N-terminal
PROSITE profilePS5088816.844425474IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474598.77E-19427492IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.86E-14428479No hitNo description
PfamPF000101.8E-12429475IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.6E-18429485IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003539.8E-15431480IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009957Biological Processepidermal cell fate specification
GO:0010091Biological Processtrichome branching
GO:0005634Cellular Componentnucleus
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 628 aa     Download sequence    Send to blast
MVPENMKKQL ALAVRSIQWS YAILWTDSTT QPGVLRWGEG YYNGDIKTRK TSQGVELNSD  60
QIGLQRSEQL RELFKSFKTT EISPQSKRPS AAALSPEDLT DAEWYYLVCM SFIFNLGQGL  120
PGRTLAKGQS IWLNNAHSAD CKVFSRSLLA KSASIETVVC FPVMEGVIEL GTTEHVSEDL  180
SLIERIKTSF LNNLHVNVPN KSGTTLKSRN QEDLAYVAFD NNVESIPEIE YDIANRTSPD  240
GSSNAFQSNQ PLDETFMVER ITSGTSQVQS WQIMDDELSN CAHNSMNSSD CISQTFASPE  300
NIPSAPKCNN PSDPFARDIQ KCNNPKMTLV DPRSDDWHYQ RVLSDLLKNS DQLLMRMHSQ  360
KFHQESSFVC WRAEGAMDCQ WPRSGTSQKL LKKVLFEVPQ MHLDGLHESQ EENDYKEGMR  420
LETDEIGMNH VMSERRRRAK LNERFLTLRS MVPSISKDDK VSILDDAIEY LKKLERRIKE  480
LEAQRGVTYI EPGTRRSPQD MVERTSDHYF SKNHNGKKSV VKRRKVCGVV ETGKEINSDA  540
LKGSYANDVT VSTSDNEIVI EMKCPSREGR LIEIMEAVNS FNIDFNSVQS TEANGNLYLT  600
IKSVFTGATV ATTKRIKQAL QKVASKF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4rqw_A1e-141919024192Transcription factor MYC3
4rqw_B1e-141919024192Transcription factor MYC3
4rs9_A1e-141919024192Transcription factor MYC3
4yz6_A1e-141919024192Transcription factor MYC3
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPhvul.002G290000.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150340.0AP015034.1 Vigna angularis var. angularis DNA, chromosome 1, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007160070.10.0hypothetical protein PHAVU_002G290000g
TrEMBLV7CPJ50.0V7CPJ5_PHAVU; Uncharacterized protein
STRINGXP_007160070.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF24443463
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G41315.11e-179bHLH family protein