PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Phvul.002G292000.1
Common NamePHAVU_002G292000g
Organism
Phaseolus vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
Family TALE
Protein Properties Length: 648aa    MW: 72328.6 Da    PI: 6.7214
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Phvul.002G292000.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox27.17.3e-094304671954
                         HHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
            Homeobox  19 Fek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                         Fe   ++yps  ++  LA+++gL+ +qV++WF N R +
  Phvul.002G292000.1 430 FEHflHPYPSDVDKHILARQTGLSRSQVSNWFINARVR 467
                         554459******************************88 PP
2BELL116.11.7e-37292362272
                BELL   2 rqelqkkkakLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 
                         + elqk+k++Lls+leeVd+rYk+y++q++ v+ssFeavag g+a++Y +lAl+a+SrhFrcLkd i++qi
  Phvul.002G292000.1 292 FVELQKRKTRLLSMLEEVDRRYKHYCNQMKGVVSSFEAVAGNGAATVYSALALRAMSRHFRCLKDGIMDQI 362
                         679*******************************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005747.6E-58229360IPR006563POX domain
PfamPF075265.1E-47235358IPR006563POX domain
PROSITE profilePS5007112.082408471IPR001356Homeobox domain
SMARTSM003895.8E-9411475IPR001356Homeobox domain
CDDcd000862.92E-11411472No hitNo description
SuperFamilySSF466895.99E-17412477IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.2E-27414477IPR009057Homeodomain-like
PfamPF059208.7E-18428467IPR008422Homeobox KN domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 648 aa     Download sequence    Send to blast
MARQLCEDKS KDMGSSTGLF YSDVSSNSPT LQPHLMNHIQ GFVTDPEMFN LTTGMEMIGF  60
SKNLHPHSES NGVMWKSFFG KSSQHAGPSS SKTMNDSSCN FYNQHEYSNK QDFTSGISET  120
SSENLIVGGA HDSAPWQENR LMLDDSSLRC VFPCEGNERP SQGLSLSLSS TNPSSIGLQS  180
FELRQTNHHQ HLSDFVSREG YFGKSINAQQ QQQMLQDGYM SPNKAANIYQ GHFLIKNSKF  240
LVPAQLLLNE FCSLGTKEND VQKQKHSQKN KWEEGNNGGG SSKNHSLSSL EFVELQKRKT  300
RLLSMLEEVD RRYKHYCNQM KGVVSSFEAV AGNGAATVYS ALALRAMSRH FRCLKDGIMD  360
QIQATRKAMG EKDPVAPGTT RGETPRLKII DRSLRQQRAF QQISMMETHP WRPQRGLPER  420
SVSVLRAWLF EHFLHPYPSD VDKHILARQT GLSRSQVSNW FINARVRLWK PMVEEMYLEE  480
EKEHQNDVAS SEGGGANPEG DQNAPREDQK PTQARLLRID SESVSSMVTS TDHKNDTKSG  540
KGLQNDNQLN DSSHPAEAFG SVELDFSSYA QHSSGVVGGG VSLTLGLQQQ GESVVSLAFP  600
PATQSSMFYA RDQIEECQTV QYSLLDGEGQ NMPYRNLMGT QLLHDLV*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4xrm_A2e-15417475563Homeobox protein Meis2
4xrm_B2e-15417475563Homeobox protein Meis2
4xrs_A1e-15417474158Homeobox protein Meis1
4xrs_B1e-15417474158Homeobox protein Meis1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtPlays a major role in ovule patterning and in determination of integument identity via its interaction with MADS-box factors. Formation of complex with AG-SEP dimers negatively regulates the carpel identity process and favors the maintenance of ovule identity. BEL1-STM complex maintains the indeterminacy of the inflorescence meristem. Required, with SPL, for cytokinin-induced PIN1 expression in ovules (PubMed:22786869). {ECO:0000269|PubMed:12244239, ECO:0000269|PubMed:17693535, ECO:0000269|PubMed:22786869}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPhvul.002G292000.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150340.0AP015034.1 Vigna angularis var. angularis DNA, chromosome 1, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007160096.10.0hypothetical protein PHAVU_002G292000g
SwissprotQ388971e-139BEL1_ARATH; Homeobox protein BEL1 homolog
TrEMBLV7CS380.0V7CS38_PHAVU; Uncharacterized protein
STRINGXP_007160096.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF46502030
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G41410.11e-115TALE family protein
Publications ? help Back to Top
  1. Yamada T,Sasaki Y,Hashimoto K,Nakajima K,Gasser CS
    CORONA, PHABULOSA and PHAVOLUTA collaborate with BELL1 to confine WUSCHEL expression to the nucellus in Arabidopsis ovules.
    Development, 2016. 143(3): p. 422-6
    [PMID:26700684]
  2. Lozano-Sotomayor P, et al.
    Altered expression of the bZIP transcription factor DRINK ME affects growth and reproductive development in Arabidopsis thaliana.
    Plant J., 2016. 88(3): p. 437-451
    [PMID:27402171]