PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Phvul.002G309200.1
Common NamePHAVU_002G309200g
Organism
Phaseolus vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
Family M-type_MADS
Protein Properties Length: 171aa    MW: 19421.4 Da    PI: 9.4632
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Phvul.002G309200.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF65.65.2e-211256448
                        -SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEE CS
              SRF-TF  4 enksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklye 48
                        ++   rqvtfskRr+g++KKA+ELS+LC+ae+a+++fs  ++ y 
  Phvul.002G309200.1 12 KDPNTRQVTFSKRRAGLFKKANELSILCGAEIAIVVFSIGNRPYS 56
                        56678********************************98776665 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004322.5E-31160IPR002100Transcription factor, MADS-box
PROSITE profilePS5006625.651161IPR002100Transcription factor, MADS-box
SuperFamilySSF554558.11E-25173IPR002100Transcription factor, MADS-box
PRINTSPR004044.2E-19323IPR002100Transcription factor, MADS-box
PfamPF003191.3E-231257IPR002100Transcription factor, MADS-box
PRINTSPR004044.2E-192338IPR002100Transcription factor, MADS-box
PRINTSPR004044.2E-193859IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 171 aa     Download sequence    Send to blast
MGRRKIEMTA VKDPNTRQVT FSKRRAGLFK KANELSILCG AEIAIVVFSI GNRPYSFGHP  60
AVDLVAAKFL EQEIKSNDVK QNSVEVGDMD RLNQQLLEIQ SQLLVEEKKG LEHDQILKQH  120
SFKQLQDAYS ELQIRVKDYI DAIEVSECLI LLAQEPVVQT TKQVKKRRKN *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6bz1_A2e-17179183MEF2 CHIMERA
6bz1_B2e-17179183MEF2 CHIMERA
6bz1_C2e-17179183MEF2 CHIMERA
6bz1_D2e-17179183MEF2 CHIMERA
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1164168KKRRK
Cis-element ? help Back to Top
SourceLink
PlantRegMapPhvul.002G309200.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150341e-135AP015034.1 Vigna angularis var. angularis DNA, chromosome 1, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007160291.11e-122hypothetical protein PHAVU_002G309200g
TrEMBLV7CSN61e-121V7CSN6_PHAVU; Uncharacterized protein
STRINGXP_007160291.11e-121(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF24242979
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G34440.12e-33AGAMOUS-like 29