PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Phvul.002G309400.1
Common NamePHAVU_002G309400g
Organism
Phaseolus vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
Family M-type_MADS
Protein Properties Length: 185aa    MW: 20769.6 Da    PI: 9.9769
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Phvul.002G309400.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF67.81e-211357549
                        SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS
              SRF-TF  5 nksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49
                        +   +qvtfskRr+g++KKA+ELS+LC+aeva+++fs+ +k y +
  Phvul.002G309400.1 13 DPNTKQVTFSKRRTGLFKKANELSILCGAEVAIVVFSPGNKPYSF 57
                        56679*********************************9998877 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006626.24161IPR002100Transcription factor, MADS-box
SMARTSM004329.5E-33160IPR002100Transcription factor, MADS-box
SuperFamilySSF554553.4E-27172IPR002100Transcription factor, MADS-box
CDDcd002659.08E-32276No hitNo description
PRINTSPR004047.6E-20323IPR002100Transcription factor, MADS-box
PfamPF003199.9E-251257IPR002100Transcription factor, MADS-box
PRINTSPR004047.6E-202338IPR002100Transcription factor, MADS-box
PRINTSPR004047.6E-203859IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 185 aa     Download sequence    Send to blast
MGRRKIEITE VKDPNTKQVT FSKRRTGLFK KANELSILCG AEVAIVVFSP GNKPYSFGHP  60
SVDVVADKFL QQESASNVVV TPNVDEGSSS SNADNIDALN QQLCGVQTQI NDEHKKASEL  120
DRRKKQQDVT KLTHNKQLQR SYIRVQRKVE DYLDAIEVSE YMLLLAKEPV IGVTKQVTIK  180
RRRN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6bz1_A8e-19180184MEF2 CHIMERA
6bz1_B8e-19180184MEF2 CHIMERA
6bz1_C8e-19180184MEF2 CHIMERA
6bz1_D8e-19180184MEF2 CHIMERA
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPhvul.002G309400.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150340.0AP015034.1 Vigna angularis var. angularis DNA, chromosome 1, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007160293.11e-134hypothetical protein PHAVU_002G309400g
TrEMBLV7CQ101e-133V7CQ10_PHAVU; Uncharacterized protein
STRINGXP_007160293.11e-133(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF24242979
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G66656.15e-34AGAMOUS-like 91