PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Phvul.002G322300.1
Common NamePHAVU_002G322300g
Organism
Phaseolus vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
Family ARR-B
Protein Properties Length: 408aa    MW: 46056 Da    PI: 6.5082
Description ARR-B family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Phvul.002G322300.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like31.53.8e-10192233253
             G2-like   2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkY 53 
                         +r++W++eLH+ F++a+++  G+         e+m+v+gL + hv+SHLQk+
  Phvul.002G322300.1 192 KRVVWSTELHDLFLNAMKKA-GE---------EAMNVPGLERGHVASHLQKH 233
                         79****************99.55.........58****************96 PP
2Response_reg571.1e-19231321109
                         EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHHH CS
        Response_reg   1 vlivdDeplvrellrqalekegyeevaeaddgeealellkekd..pDlillDiempgmdGlellkeireeepklpiivvtahgeeedalea 89 
                         vl++d + +v+e ++qa+++  y++++ ++++ +a + l+e++  ++lil+   mp mdG+e+l+  ++e+ ++p i++++ ++++ + +a
  Phvul.002G322300.1  23 VLVIDTNLSVLEYIKQACTHYSYQVIP-CSESLSAANFLRERKelIHLILIEAHMPLMDGYEFLQFVKQEQINVPLIMMSTDDSDASVMNA 112
                         89*********************6666.77777777777777779********************************************** PP

                         HHTTESEEEESS--HHHHHH CS
        Response_reg  90 lkaGakdflsKpfdpeelvk 109
                         +++Ga d+  Kp +++++v 
  Phvul.002G322300.1 113 IEVGACDYWIKPLEKNRIVS 132
                         ****************9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.40.50.23001.2E-2719155No hitNo description
SuperFamilySSF521728.54E-2619146IPR011006CheY-like superfamily
SMARTSM004481.4E-1421134IPR001789Signal transduction response regulator, receiver domain
PROSITE profilePS5011031.3922138IPR001789Signal transduction response regulator, receiver domain
PfamPF000722.7E-1623133IPR001789Signal transduction response regulator, receiver domain
CDDcd001565.51E-1824131No hitNo description
Gene3DG3DSA:1.10.10.601.3E-10189236IPR009057Homeodomain-like
SuperFamilySSF466893.4E-7190237IPR009057Homeodomain-like
TIGRFAMsTIGR015571.9E-9192233IPR006447Myb domain, plants
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000160Biological Processphosphorelay signal transduction system
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 408 aa     Download sequence    Send to blast
MAENSSPAID THRTLRFSSM LNVLVIDTNL SVLEYIKQAC THYSYQVIPC SESLSAANFL  60
RERKELIHLI LIEAHMPLMD GYEFLQFVKQ EQINVPLIMM STDDSDASVM NAIEVGACDY  120
WIKPLEKNRI VSMWTHVVKN SMSKDKKRKD IGCQKDYDRT RVMRYNSEFA SSLVDFDVDE  180
SKNANPPSRK TKRVVWSTEL HDLFLNAMKK AGEEAMNVPG LERGHVASHL QKHTKSLTEK  240
QQKEMSLASW NTEPERIHLQ SSTSLTDFHH PGFTGNMGPK GEQHFHAEEA LAHHHHPLLA  300
TFSNMAIAEN SPQFMRNIRQ QYHHKIHPIN FDYNSGINMD NGLASLQSIK GGNNMGEVIL  360
NQDTTKASVY HPQSQNAGLS SCAVRSSDAI DIDDATSEEQ LILSTME*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPhvul.002G322300.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007160440.10.0hypothetical protein PHAVU_002G322300g
TrEMBLV7CQP20.0V7CQP2_PHAVU; Uncharacterized protein
STRINGXP_007160440.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF2069324
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G01760.12e-38response regulator 14