PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Phvul.002G329500.1
Common NamePHAVU_002G329500g
Organism
Phaseolus vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
Family WOX
Protein Properties Length: 360aa    MW: 40911.7 Da    PI: 8.0726
Description WOX family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Phvul.002G329500.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox69.63.7e-2282141357
                         --SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
            Homeobox   3 kRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 
                         +R+++t+eql++Leel+++ +r+psae++++++++l    +++ ++V++WFqN++a+e++
  Phvul.002G329500.1  82 SRWNPTPEQLRALEELYRRgTRTPSAEQIQQITAQLrrfgKIEGKNVFYWFQNHKARERQ 141
                         7*****************99**************************************97 PP
2Wus_type_Homeobox114.74.6e-3781143365
   Wus_type_Homeobox   3 rtRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqkq 65 
                         ++RW+PtpeQ++ Leely++G+rtP++e+iq+ita+L+++Gkie+kNVfyWFQN+kaRerqk+
  Phvul.002G329500.1  81 SSRWNPTPEQLRALEELYRRGTRTPSAEQIQQITAQLRRFGKIEGKNVFYWFQNHKARERQKR 143
                         79***********************************************************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003899.5E-579146IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.603.7E-982141IPR009057Homeodomain-like
SuperFamilySSF466898.76E-1382148IPR009057Homeodomain-like
PfamPF000467.0E-2082141IPR001356Homeobox domain
CDDcd000868.12E-783143No hitNo description
PROSITE profilePS5007111.45187142IPR001356Homeobox domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0048513Biological Processanimal organ development
GO:0099402Biological Processplant organ development
GO:0005634Cellular Componentnucleus
GO:0005829Cellular Componentcytosol
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 360 aa     Download sequence    Send to blast
MWMVGYNEGG EFSMADYGLN GRKLRPLMPR PVTSPNNTPN TNSPCLSRIH HGNDFFSQYH  60
NLASVADQGK REFNPPPVVV SSRWNPTPEQ LRALEELYRR GTRTPSAEQI QQITAQLRRF  120
GKIEGKNVFY WFQNHKARER QKRRRQMESA AEGHHTRDFD GTLDKKDLGA SRTVFEVEQT  180
KNWESSTNCS TLAKESVSIQ RAAAKADCRT EGWLQFDEEE LHHTQHTRNL MERNATWHMM  240
QLSCPPPPSV SPHLINTPPT ISTSSMATTP SVTARVMDPK LIKTHDLSFF ISPNRENGII  300
HLSSINTDDN SVESQTLQLF PIRNGDESSD NLNHHKETEV SVSAMNAPSQ FFEFLPLKK*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPhvul.002G329500.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150341e-155AP015034.1 Vigna angularis var. angularis DNA, chromosome 1, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007160532.10.0hypothetical protein PHAVU_002G329500g
TrEMBLV7CUE50.0V7CUE5_PHAVU; Uncharacterized protein
STRINGXP_007160532.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF28923471
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18010.15e-66WUSCHEL related homeobox 1