PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Phvul.002G331600.1
Common NamePHAVU_002G331600g
Organism
Phaseolus vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
Family NF-X1
Protein Properties Length: 1079aa    MW: 116554 Da    PI: 8.1646
Description NF-X1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Phvul.002G331600.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-NF-X1261.9e-08266284119
            zf-NF-X1   1 CGkHkCqklCHeGpCppCp 19 
                         CG+H+C+++CH+GpC+pC+
  Phvul.002G331600.1 266 CGRHRCEQICHLGPCDPCK 284
                         ******************8 PP
2zf-NF-X122.13.3e-07388405118
            zf-NF-X1   1 CGkHkCqklCHeGpCppC 18 
                         CG+H+C++ CH G+C pC
  Phvul.002G331600.1 388 CGIHRCEEACHAGDCSPC 405
                         ****************** PP
3zf-NF-X118.15.8e-06484502119
            zf-NF-X1   1 CGkHkCqklCHeGpCppCp 19 
                         CG+H C++lCH G CppC 
  Phvul.002G331600.1 484 CGQHACESLCHSGHCPPCL 502
                         ******************6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF578501.17E-592161No hitNo description
PROSITE profilePS500168.72599160IPR019787Zinc finger, PHD-finger
PROSITE patternPS013590102157IPR019786Zinc finger, PHD-type, conserved site
PROSITE profilePS500899.229102158IPR001841Zinc finger, RING-type
CDDcd060082.06E-4191249No hitNo description
SMARTSM004380.023211229IPR000967Zinc finger, NF-X1-type
PfamPF014228213228IPR000967Zinc finger, NF-X1-type
CDDcd060081.04E-11256304No hitNo description
PfamPF014223.6E-6266284IPR000967Zinc finger, NF-X1-type
SMARTSM004387.1E-5266285IPR000967Zinc finger, NF-X1-type
CDDcd060084.67E-8320363No hitNo description
PfamPF014220.15330347IPR000967Zinc finger, NF-X1-type
SMARTSM004380.13330349IPR000967Zinc finger, NF-X1-type
CDDcd060083.25E-13378426No hitNo description
PfamPF014227.6E-6388405IPR000967Zinc finger, NF-X1-type
SMARTSM004381.4E-4388407IPR000967Zinc finger, NF-X1-type
PfamPF0142218446457IPR000967Zinc finger, NF-X1-type
SMARTSM0043870446476IPR000967Zinc finger, NF-X1-type
CDDcd060081.21E-8474517No hitNo description
PfamPF014221.1E-4484501IPR000967Zinc finger, NF-X1-type
SMARTSM004384.1E-4484503IPR000967Zinc finger, NF-X1-type
CDDcd060081.52E-4531579No hitNo description
SMARTSM004382.4541559IPR000967Zinc finger, NF-X1-type
PfamPF0142213548558IPR000967Zinc finger, NF-X1-type
PfamPF014220.7594609IPR000967Zinc finger, NF-X1-type
SMARTSM004387.3594623IPR000967Zinc finger, NF-X1-type
CDDcd060082.06E-4621670No hitNo description
PfamPF0142229625651IPR000967Zinc finger, NF-X1-type
SMARTSM004380.098632653IPR000967Zinc finger, NF-X1-type
Gene3DG3DSA:3.30.70.3307.3E-5871922IPR012677Nucleotide-binding alpha-beta plait domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009642Biological Processresponse to light intensity
GO:0009651Biological Processresponse to salt stress
GO:0009697Biological Processsalicylic acid biosynthetic process
GO:0010188Biological Processresponse to microbial phytotoxin
GO:0010310Biological Processregulation of hydrogen peroxide metabolic process
GO:0042742Biological Processdefense response to bacterium
GO:0005634Cellular Componentnucleus
GO:0000166Molecular Functionnucleotide binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 1079 aa     Download sequence    Send to blast
MSSQERSQRS RVPRQEWIRR GSNDQNQNQN LNQNQNAAAA SGSSNTTNRH RRSAPIPSHN  60
PNPNPVPNPK SNVQKRFNLR DSNLPQLLQE IQDKLVKGAV ECMICCDMVR RSAPIWSCSS  120
CFSIFHLNCI KKWARAPTSV DVSVDKNQRF NWRCPGCQSV QLSSSKEIRY VCFCGKRPDP  180
PSDLYLLPHS CGEPCAKPLE REIGGDKEVL CPHVCVLQCH PGPCPPCKAF APPRLCPCGK  240
KNITTRCSDR QSVLTCGQRC EKLLECGRHR CEQICHLGPC DPCKIPVNAS CFCSKRTESI  300
LCGDMALKGE IKTEGGVFSC GSTCGKKLGC GNHICIETCH PDSCGECGLL PSHIKTCCCG  360
KTKLKQERQS CLDPIPTCSQ VCGKTLPCGI HRCEEACHAG DCSPCLVLVS QKCRCGSTSR  420
TVECCKTKVD AVKFTCEKPC GQKKNCGRHR CSERCCPLSN PNNVQIADWD PHFCSLPCGK  480
KLRCGQHACE SLCHSGHCPP CLETIFTDLT CACGKTSIPP PLPCGTPPPS CQLPCSVPQP  540
CLHPASHSCH FGDCPPCSVP VAKECIGGHV ILRNIPCGSK DIRCNKLCGK TRQCGLHACG  600
RTCHLPPCDN PSAVPGTRAS CGQTCGAPRR DCRHTCTAPC HPSTPCPDTR CEFPVTIACS  660
CGRITATVPC DAGGSCANYN ADAVHEASII QKLPVLLQPV AANGKKAPLG QRKLMCNDDC  720
AKLERKRVLA DAFEITAPNL DSLHFGDNPV ASELLADMLR RDLKWVLSVE ERCKVLVLGK  780
NRGNTQGPKI HAFCPMLKDK RDAVRVIAER WKLAVYVAGR EPKRFVLVHV TPKSRAPARV  840
LGVKGTTTVN APIPPAFDPL VDMDPRLVVS FLDLPREADI SALVLRFGGE CELVWLNDKN  900
ALAVFNDPAR AATALRRLDH GTVYQGAVVV IVQNVGASAA SSATNPWGGS GTTKGGGSLA  960
ALKGNPWKKD VVQEPGWKDS WGDEEWATGS ANVHLPIQKK ETLISASVNP WSVLNQESSS  1020
SSSTAAVKSD VSREHSESSS VTNLEPHNGG SSIGGQHAGN LHTSEDSEVV DDWEKACE*
Functional Description ? help Back to Top
Source Description
UniProtMediates E2-dependent ubiquitination (By similarity). Confers resistance to osmotic stress such as high salinity. Promotes H(2)O(2) production. Negative regulator of some defense-related genes via an salicylic acid (SA)-dependent signaling pathway. Confers susceptibility to the compatible phytopathogen Pseudomonas syringae pv. tomato strain DC3000 (Pst DC3000). Mediates resistance to type A trichothecenes (phytotoxins produced by phytopathogenic fungi). {ECO:0000250, ECO:0000269|PubMed:16905136, ECO:0000269|PubMed:18069941, ECO:0000269|PubMed:19704430}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPhvul.002G331600.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By brassinosteroids, osmotic stress and high salinity. Accumulates in response to SA, ethylene, methyl jasmonate (MeJA), flagellin (e.g. flg22), and type A trichothecenes such as T-2 toxin and diacetoxyscirpenol (DAS), but not in response to type B trichothecenes such as deoxynivalenol (DON). {ECO:0000269|PubMed:16905136, ECO:0000269|PubMed:18069941, ECO:0000269|PubMed:19704430}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150340.0AP015034.1 Vigna angularis var. angularis DNA, chromosome 1, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007160557.10.0hypothetical protein PHAVU_002G331600g
SwissprotQ9SY590.0NFXL1_ARATH; NF-X1-type zinc finger protein NFXL1
TrEMBLV7CUH00.0V7CUH0_PHAVU; Uncharacterized protein
STRINGXP_007160557.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF69723145
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G10170.10.0NF-X-like 1