PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Phvul.003G007500.1
Common NamePHAVU_003G007500g
Organism
Phaseolus vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
Family B3
Protein Properties Length: 314aa    MW: 36720.9 Da    PI: 9.3554
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Phvul.003G007500.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B343.36.3e-1410101199
                         EEEE-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSE CS
                  B3   1 ffkvltpsdvlksgrlvlpkkfaeeh..ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrse 89 
                         ffkv   +++l++g++ +p +f+++h  g++  +   ++l  ++g + +v    ++k+g++++ +GWkeF+k  +L++  f+vF+++g+s+
  Phvul.003G007500.1  10 FFKVI-VESTLQRGIMKIPTSFVRRHweGMS--N--PVILSLPNGSKSKVFW--QNKDGGVWFCNGWKEFAKYSKLDVSHFIVFRYEGNSC 93 
                         67766.456777889***********85333..3..49999999**999999..************************************* PP

                         E..EEEEE-S CS
                  B3  90 felvvkvfrk 99 
                         f  +v +f k
  Phvul.003G007500.1  94 F--NVIIFGK 101
                         *..8877765 PP
2B3551.5e-17207293595
                         -..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEE CS
                  B3   5 ltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvk 95 
                          +++ ++++++l++p +fa+ + +k e+  t tl  e+gr+W+v+ +  ++ +++v+++GW++F  +n+Lk gD++ F++  ++ f ++v+
  Phvul.003G007500.1 207 IIRKTYTERDLLIMPAEFAKPYLHK-EG--TATLFVEHGRTWKVQTK-VNSHEQFVFSSGWRKFLLDNKLKLGDVCAFEMLVSEPFLFKVT 293
                         567788999**********999655.34..78999999********4.444456*************************765577756665 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019368.44E-215102IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.104.7E-207102IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086310.2369102IPR003340B3 DNA binding domain
CDDcd100179.53E-12999No hitNo description
PfamPF023627.7E-111099IPR003340B3 DNA binding domain
SMARTSM010191.7E-910102IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.103.0E-20196295IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019366.87E-20197295IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086313.676203298IPR003340B3 DNA binding domain
SMARTSM010197.0E-11204298IPR003340B3 DNA binding domain
PfamPF023622.8E-15207293IPR003340B3 DNA binding domain
CDDcd100172.81E-15207296No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 314 aa     Download sequence    Send to blast
MSSQYHGVHF FKVIVESTLQ RGIMKIPTSF VRRHWEGMSN PVILSLPNGS KSKVFWQNKD  60
GGVWFCNGWK EFAKYSKLDV SHFIVFRYEG NSCFNVIIFG KSALEIEYPL SRDATNEEVE  120
EIDEGSDFSL KFSEERSKRP REEAQEEEEE SPNKHKKRAC SDYSKHKNTG SSRASEHCKG  180
DFKKKLRMFH KKVKEMFKSN HKHFTCIIRK TYTERDLLIM PAEFAKPYLH KEGTATLFVE  240
HGRTWKVQTK VNSHEQFVFS SGWRKFLLDN KLKLGDVCAF EMLVSEPFLF KVTIYPLEDN  300
SNTPLFKGIH YYY*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPhvul.003G007500.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007153107.10.0hypothetical protein PHAVU_003G007500g
TrEMBLV7C8660.0V7C866_PHAVU; Uncharacterized protein
STRINGXP_007153107.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF140231017
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18990.15e-27B3 family protein